RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 HNRNPMP52272 730 aaKnown RBP eCLIP19.92■□□□□ 0.783e-7■□□□□ 10.2
SMAD4-201ENST00000342988 NOB1Q9ULX3 412 aaKnown RBP19.92■□□□□ 0.78
SMAD4-201ENST00000342988 TMCO4Q5TGY1 634 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 FAN1Q9Y2M0 1017 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 STARD3NLO95772 234 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 PAXIP1Q6ZW49 1069 aaPredicted RBP19.91■□□□□ 0.78
SMAD4-201ENST00000342988 KRT3P12035 628 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 CLNS1AP54105 237 aaKnown RBP19.91■□□□□ 0.78
SMAD4-201ENST00000342988 GIMAP4Q9NUV9 329 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 PDE4BQ07343 736 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 SMARCC2Q8TAQ2 1214 aa19.91■□□□□ 0.78
SMAD4-201ENST00000342988 CROCCP2Q86T23 111 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 RAP1GDS1P52306 607 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 HDXQ7Z353 690 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 GBP5Q96PP8 586 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 N4BP3O15049 544 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 SRGAP3O43295 1099 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 KIFC2Q96AC6 838 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 KMT5BQ4FZB7 885 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 ADCY5O95622 1261 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 PDZRN3Q9UPQ7 1066 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 STAT6P42226 847 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 UBASH3AP57075 661 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 FSIP1Q8NA03 581 aa19.9■□□□□ 0.78
SMAD4-201ENST00000342988 SMIM24O75264 130 aa19.89■□□□□ 0.78
SMAD4-201ENST00000342988 SDCCAG3Q96C92 435 aa19.89■□□□□ 0.78
SMAD4-201ENST00000342988 AGTPBP1Q9UPW5 1226 aa19.89■□□□□ 0.78
SMAD4-201ENST00000342988 ZPR1O75312 459 aa19.89■□□□□ 0.77
SMAD4-201ENST00000342988 TNNC1P63316 161 aa19.89■□□□□ 0.77
SMAD4-201ENST00000342988 MCM10Q7L590 875 aa19.89■□□□□ 0.77
SMAD4-201ENST00000342988 UTP11Q9Y3A2 253 aaKnown RBP19.89■□□□□ 0.77
SMAD4-201ENST00000342988 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.89■□□□□ 0.77
SMAD4-201ENST00000342988 SLC4A2P04920 1241 aa19.89■□□□□ 0.77
SMAD4-201ENST00000342988 XPCQ01831 940 aaPredicted RBP19.89■□□□□ 0.77
SMAD4-201ENST00000342988 PPANQ9NQ55 473 aaKnown RBP19.89■□□□□ 0.77
SMAD4-201ENST00000342988 ZNF213O14771 459 aa19.89■□□□□ 0.77
SMAD4-201ENST00000342988 METTL24Q5JXM2 366 aa19.89■□□□□ 0.77
SMAD4-201ENST00000342988 MYL6BP14649 208 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 ARHGAP25P42331 645 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 UVSSAQ2YD98 709 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 SPAG1Q07617 926 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 MTHFSP49914 203 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 SEL1L2Q5TEA6 688 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 KIFAP3Q92845 792 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 GLRX3O76003 335 aaKnown RBP19.88■□□□□ 0.77
SMAD4-201ENST00000342988 CDR2Q01850 454 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 CCDC102BQ68D86 513 aa19.88■□□□□ 0.77
SMAD4-201ENST00000342988 IFIT1P09914 478 aaKnown RBP19.87■□□□□ 0.77
SMAD4-201ENST00000342988 TAF7Q15545 349 aaPredicted RBP19.87■□□□□ 0.77
SMAD4-201ENST00000342988 CCDC25Q86WR0 208 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 UBLCP1Q8WVY7 318 aaPredicted RBP19.87■□□□□ 0.77
SMAD4-201ENST00000342988 RANBP6O60518 1105 aaKnown RBP19.87■□□□□ 0.77
SMAD4-201ENST00000342988 PLCB4Q15147 1175 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 VPS18Q9P253 973 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 GABPAQ06546 454 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 HLA-DOAP06340 250 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 UBE2HP62256 183 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 ZSCAN16Q9H4T2 348 aaPredicted RBP19.87■□□□□ 0.77
SMAD4-201ENST00000342988 PLCB1Q9NQ66 1216 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 COG7P83436 770 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 PSMD6Q15008 389 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 CXorf38Q8TB03 319 aa19.87■□□□□ 0.77
SMAD4-201ENST00000342988 ACTN4O43707 911 aaKnown RBP19.86■□□□□ 0.77
SMAD4-201ENST00000342988 FAM13AO94988 1023 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 NBPF7P0C2Y1 421 aaPredicted RBP19.86■□□□□ 0.77
SMAD4-201ENST00000342988 CNGA4Q8IV77 575 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 IDEP14735 1019 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 ATAD2Q6PL18 1390 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 KIF1BPQ96EK5 621 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 AFG3L2Q9Y4W6 797 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 CCDC125Q86Z20 511 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 C1orf115Q9H7X2 142 aa19.86■□□□□ 0.77
SMAD4-201ENST00000342988 GOLGA6CA6NDK9 693 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 GOLGA6BA6NDN3 693 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 BAG3O95817 575 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 GOLGA6DP0CG33 693 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 CCDC124Q96CT7 223 aaKnown RBP19.85■□□□□ 0.77
SMAD4-201ENST00000342988 GOLGA6AQ9NYA3 693 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 SLC5A1P13866 664 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 ZNF428Q96B54 188 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 MMRN2Q9H8L6 949 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 ZNF131P52739 623 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 NLRP6P59044 892 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 LGSNQ5TDP6 509 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 RASA3Q14644 834 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 ORC6Q9Y5N6 252 aa19.85■□□□□ 0.77
SMAD4-201ENST00000342988 SIRT1Q96EB6 747 aa19.84■□□□□ 0.77
SMAD4-201ENST00000342988 BTBD11A6QL63 1104 aa19.84■□□□□ 0.77
SMAD4-201ENST00000342988 PSMA7O14818 248 aa19.84■□□□□ 0.77
SMAD4-201ENST00000342988 CCT6AP40227 531 aaKnown RBP19.84■□□□□ 0.77
SMAD4-201ENST00000342988 DRC3Q9H069 523 aa19.84■□□□□ 0.77
SMAD4-201ENST00000342988 BAG5Q9UL15 447 aa19.84■□□□□ 0.77
SMAD4-201ENST00000342988 ZSWIM4Q9H7M6 989 aa19.84■□□□□ 0.77
SMAD4-201ENST00000342988 LUC7L3O95232 432 aaKnown RBP19.83■□□□□ 0.77
SMAD4-201ENST00000342988 PHEXP78562 749 aa19.83■□□□□ 0.77
SMAD4-201ENST00000342988 TMEM110-MUSTN1A8MSY1 372 aa19.83■□□□□ 0.77
SMAD4-201ENST00000342988 RAD54L2Q9Y4B4 1467 aa19.83■□□□□ 0.76
SMAD4-201ENST00000342988 ZNF165P49910 485 aa19.83■□□□□ 0.76
SMAD4-201ENST00000342988 UAP1Q16222 522 aaPredicted RBP19.82■□□□□ 0.76
SMAD4-201ENST00000342988 PPP4R1Q8TF05 950 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms