RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 KRT28Q7Z3Y7 464 aa20.53■□□□□ 0.88
PTP4A3-201ENST00000329397 MAP7D2Q96T17 732 aa20.53■□□□□ 0.88
PTP4A3-201ENST00000329397 TRIM5Q9C035 493 aa20.53■□□□□ 0.88
PTP4A3-201ENST00000329397 SIPA1L3O60292 1781 aaPredicted RBP20.53■□□□□ 0.88
PTP4A3-201ENST00000329397 ERCC4Q92889 916 aaPredicted RBP20.52■□□□□ 0.88
PTP4A3-201ENST00000329397 FBXW7Q969H0 707 aa20.52■□□□□ 0.88
PTP4A3-201ENST00000329397 NEUROD6Q96NK8 337 aa20.52■□□□□ 0.88
PTP4A3-201ENST00000329397 PRIMPOLQ96LW4 560 aa20.52■□□□□ 0.88
PTP4A3-201ENST00000329397 NCOA5Q9HCD5 579 aaKnown RBP20.52■□□□□ 0.88
PTP4A3-201ENST00000329397 ATP5JP18859 108 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 CHRNA2Q15822 529 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 HMG20BQ9P0W2 317 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 RIOK3O14730 519 aaKnown RBP20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 RESTQ13127 1097 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 COPRSQ9NQ92 184 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 GOLIM4O00461 696 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 APOBRQ0VD83 1088 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 LMBR1LQ6UX01 489 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 CLSTN2Q9H4D0 955 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 KIF3AQ9Y496 699 aa20.51■□□□□ 0.87
PTP4A3-201ENST00000329397 CSB-PGBD3P0DP91 1061 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 PHKG2P15735 406 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 TIMM10P62072 90 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 BCL2L12Q9HB09 334 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 ZNF165P49910 485 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 USPL1Q5W0Q7 1092 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 LRP10Q7Z4F1 713 aa20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 C16orf45Q96MC5 204 aaPredicted RBP20.5■□□□□ 0.87
PTP4A3-201ENST00000329397 JCADQ9P266 1359 aa20.49■□□□□ 0.87
PTP4A3-201ENST00000329397 HMGN5P82970 282 aaKnown RBP20.49■□□□□ 0.87
PTP4A3-201ENST00000329397 TTC5Q8N0Z6 440 aa20.49■□□□□ 0.87
PTP4A3-201ENST00000329397 GOLGA6L6A8MZA4 724 aa20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 IPO4Q8TEX9 1081 aaKnown RBP20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 MCMDC2Q4G0Z9 681 aa20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 DDX19AQ9NUU7 478 aaKnown RBP20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 TAOK2Q9UL54 1235 aa20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 PHRF1Q9P1Y6 1649 aaKnown RBP20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 AFDNP55196 1824 aaKnown RBP20.48■□□□□ 0.87
PTP4A3-201ENST00000329397 MEGF6O75095 1541 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 ARID5BQ14865 1188 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 TSGA10IPQ3SY00 556 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 HOMEZQ8IX15 550 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 ZNF594Q96JF6 807 aaPredicted RBP20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 OVOS2A0A0G2JMS6 1433 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 CCDC144BQ3MJ40 725 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 C11orf57Q6ZUT1 292 aaPredicted RBP20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 CCDC144CPQ8IYA2 1237 aa20.47■□□□□ 0.87
PTP4A3-201ENST00000329397 CYP27B1O15528 508 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 ZNF75DP51815 510 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 KRT32Q14532 448 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 CTDNEP1O95476 244 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 TATP17735 454 aaPredicted RBP20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 HAUS7Q99871 368 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 GPHNQ9NQX3 736 aaPredicted RBP20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 SLIT3O75094 1523 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 RAB11FIP4Q86YS3 637 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 GOLPH3LQ9H4A5 285 aa20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 U3KPZ7 1027 aaPredicted RBP20.46■□□□□ 0.87
PTP4A3-201ENST00000329397 SNRPA1P09661 255 aaKnown RBP20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 CBX1P83916 185 aa20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 TTLL5Q6EMB2 1281 aa20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 NSUN7Q8NE18 718 aaKnown RBP20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 ALDH8A1Q9H2A2 487 aaPredicted RBP20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 PTPDC1A2A3K4 754 aa20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 MRC1P22897 1456 aa20.45■□□□□ 0.86
PTP4A3-201ENST00000329397 GTF2F1P35269 517 aaKnown RBP eCLIP20.44■□□□□ 0.861e-6■■■□□ 15.2
PTP4A3-201ENST00000329397 HSP90AB3PQ58FF7 597 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 USP28Q96RU2 1077 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 LAMA4Q16363 1823 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 LRRC24Q50LG9 513 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 OTUD7BQ6GQQ9 843 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 ZSCAN25Q6NSZ9 544 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 RBM43Q6ZSC3 357 aaKnown RBP20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 TTLL7Q6ZT98 887 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 KBTBD3Q8NAB2 608 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 CACTINQ8WUQ7 758 aaKnown RBP20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 CLIP2Q9UDT6 1046 aa20.44■□□□□ 0.86
PTP4A3-201ENST00000329397 ADD1P35611 737 aaKnown RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 RABL6Q3YEC7 729 aaPredicted RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 PPP4R3BQ5MIZ7 849 aa20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 PLA2G4DQ86XP0 818 aa20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 CCDC85AQ96PX6 553 aaPredicted RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 CCDC94Q9BW85 323 aaPredicted RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 SPDYE4A6NLX3 237 aa20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 CHAF1AQ13111 956 aaPredicted RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 MTERF4Q7Z6M4 381 aaKnown RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 CCAR1Q8IX12 1150 aaKnown RBP20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 SCN11AQ9UI33 1791 aa20.43■□□□□ 0.86
PTP4A3-201ENST00000329397 NAA30Q147X3 362 aaPredicted RBP20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 IFNL2Q8IZJ0 200 aa20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 TDRD7Q8NHU6 1098 aaKnown RBP20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 HAND2P61296 217 aa20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 ATP2B3Q16720 1220 aa20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 ZFP91Q96JP5 570 aaPredicted RBP20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 ZBTB3Q9H5J0 574 aa20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 PAG1Q9NWQ8 432 aa20.42■□□□□ 0.86
PTP4A3-201ENST00000329397 PROSER2Q86WR7 435 aaPredicted RBP20.41■□□□□ 0.86
PTP4A3-201ENST00000329397 FMNL2Q96PY5 1086 aa20.41■□□□□ 0.86
PTP4A3-201ENST00000329397 CASP7P55210 303 aa20.41■□□□□ 0.86
PTP4A3-201ENST00000329397 DHX32Q7L7V1 743 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms