RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 NCBP1Q09161 790 aaKnown RBP22.48■■□□□ 1.19
RTN4-201ENST00000317610 SCRN1Q12765 414 aa22.48■■□□□ 1.19
RTN4-201ENST00000317610 RCOR1Q9UKL0 485 aa22.48■■□□□ 1.19
RTN4-201ENST00000317610 PTPN12Q05209 780 aaKnown RBP22.47■■□□□ 1.19
RTN4-201ENST00000317610 CCDC144BQ3MJ40 725 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 RABL6Q3YEC7 729 aaPredicted RBP22.47■■□□□ 1.19
RTN4-201ENST00000317610 MCMDC2Q4G0Z9 681 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 CCDC144CPQ8IYA2 1237 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 MRFAP1L1Q96HT8 127 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 C16orf45Q96MC5 204 aaPredicted RBP22.47■■□□□ 1.19
RTN4-201ENST00000317610 TNNT1P13805 278 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 ESCO1Q5FWF5 840 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 ZNF790Q6PG37 636 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 DDX11Q96FC9 970 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 HAUS7Q99871 368 aa22.47■■□□□ 1.19
RTN4-201ENST00000317610 GTPBP4Q9BZE4 634 aaKnown RBP22.47■■□□□ 1.19
RTN4-201ENST00000317610 HSP90B1P14625 803 aaKnown RBP22.46■■□□□ 1.19
RTN4-201ENST00000317610 XAGE3Q8WTP9 111 aa22.46■■□□□ 1.19
RTN4-201ENST00000317610 MYD88Q99836 296 aa22.46■■□□□ 1.19
RTN4-201ENST00000317610 NEMFO60524 1076 aa22.46■■□□□ 1.19
RTN4-201ENST00000317610 HMGB1P09429 215 aaKnown RBP22.46■■□□□ 1.19
RTN4-201ENST00000317610 TFCP2Q12800 502 aa22.46■■□□□ 1.19
RTN4-201ENST00000317610 STX1AQ16623 288 aa22.46■■□□□ 1.19
RTN4-201ENST00000317610 NSUN7Q8NE18 718 aaKnown RBP22.46■■□□□ 1.19
RTN4-201ENST00000317610 AFDNP55196 1824 aaKnown RBP22.45■■□□□ 1.19
RTN4-201ENST00000317610 SH3TC1Q8TE82 1336 aa22.45■■□□□ 1.18
RTN4-201ENST00000317610 RBM6P78332 1123 aaKnown RBP22.45■■□□□ 1.18
RTN4-201ENST00000317610 ATL3Q6DD88 541 aa22.45■■□□□ 1.18
RTN4-201ENST00000317610 CCDC129Q6ZRS4 1044 aa22.45■■□□□ 1.18
RTN4-201ENST00000317610 FEZ1Q99689 392 aa22.45■■□□□ 1.18
RTN4-201ENST00000317610 C11orf57Q6ZUT1 292 aaPredicted RBP22.45■■□□□ 1.18
RTN4-201ENST00000317610 STOX1Q6ZVD7 989 aa22.45■■□□□ 1.18
RTN4-201ENST00000317610 LRP10Q7Z4F1 713 aa22.45■■□□□ 1.18
RTN4-201ENST00000317610 COPS6Q7L5N1 327 aa22.44■■□□□ 1.18
RTN4-201ENST00000317610 LRRC8AQ8IWT6 810 aa22.44■■□□□ 1.18
RTN4-201ENST00000317610 AGXT2Q9BYV1 514 aa22.44■■□□□ 1.18
RTN4-201ENST00000317610 GOLGA6L19H0YKK7 550 aa22.43■■□□□ 1.18
RTN4-201ENST00000317610 SEC62Q99442 399 aaKnown RBP22.43■■□□□ 1.18
RTN4-201ENST00000317610 CTDNEP1O95476 244 aa22.43■■□□□ 1.18
RTN4-201ENST00000317610 SNW1Q13573 536 aaKnown RBP22.43■■□□□ 1.18
RTN4-201ENST00000317610 DHX32Q7L7V1 743 aaKnown RBP22.43■■□□□ 1.18
RTN4-201ENST00000317610 CCAR1Q8IX12 1150 aaKnown RBP22.43■■□□□ 1.18
RTN4-201ENST00000317610 KDM6AO15550 1401 aaPredicted RBP22.43■■□□□ 1.18
RTN4-201ENST00000317610 PALLDQ8WX93 1383 aa22.43■■□□□ 1.18
RTN4-201ENST00000317610 MYL6BP14649 208 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 U2AF2P26368 475 aaKnown RBP eCLIP22.42■■□□□ 1.187e-8■■□□□ 13
RTN4-201ENST00000317610 TICAM2Q86XR7 235 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 DBNDD2Q9BQY9 259 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 GOLPH3LQ9H4A5 285 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 SLC52A2Q9HAB3 445 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 CHGBP05060 677 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 TPD52L1Q16890 204 aaPredicted RBP22.42■■□□□ 1.18
RTN4-201ENST00000317610 KBTBD3Q8NAB2 608 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 ENGASEQ8NFI3 743 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 SALL1Q9NSC2 1324 aa22.42■■□□□ 1.18
RTN4-201ENST00000317610 TRPM3Q9HCF6 1732 aaPredicted RBP22.41■■□□□ 1.18
RTN4-201ENST00000317610 RGPD5Q99666 1765 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 ARFGEF2Q9Y6D5 1785 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 SLC39A6Q13433 755 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 AXIN2Q9Y2T1 843 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 NDUFB9Q9Y6M9 179 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 EXOSC10Q01780 885 aaKnown RBP22.41■■□□□ 1.18
RTN4-201ENST00000317610 ANKRD13DQ6ZTN6 518 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 CCDC112Q8NEF3 446 aa22.41■■□□□ 1.18
RTN4-201ENST00000317610 DNAJC2Q99543 621 aaKnown RBP22.41■■□□□ 1.18
RTN4-201ENST00000317610 PTPDC1A2A3K4 754 aa22.4■■□□□ 1.18
RTN4-201ENST00000317610 DSCC1Q9BVC3 393 aa22.4■■□□□ 1.18
RTN4-201ENST00000317610 LRRC2Q9BYS8 371 aa22.4■■□□□ 1.18
RTN4-201ENST00000317610 CCDC73Q6ZRK6 1079 aa22.4■■□□□ 1.18
RTN4-201ENST00000317610 DHX40Q8IX18 779 aaKnown RBP22.4■■□□□ 1.18
RTN4-201ENST00000317610 ZNF396Q96N95 335 aaPredicted RBP22.4■■□□□ 1.18
RTN4-201ENST00000317610 SPDYE4A6NLX3 237 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 FAM160A1Q05DH4 1040 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 USP28Q96RU2 1077 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 HELLSQ9NRZ9 838 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 KCND1Q9NSA2 647 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 ANO10Q9NW15 660 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 ABCC6O95255 1503 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 CEBPZQ03701 1054 aaKnown RBP22.39■■□□□ 1.17
RTN4-201ENST00000317610 CEP135Q66GS9 1140 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 NYAP1Q6ZVC0 841 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 DDX46Q7L014 1031 aaKnown RBP22.39■■□□□ 1.17
RTN4-201ENST00000317610 OGFRQ9NZT2 677 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 CTNNA3Q9UI47 895 aa22.39■■□□□ 1.17
RTN4-201ENST00000317610 CASP7P55210 303 aa22.38■■□□□ 1.17
RTN4-201ENST00000317610 FGD1P98174 961 aa22.38■■□□□ 1.17
RTN4-201ENST00000317610 FTOQ9C0B1 505 aaKnown RBP eCLIP22.38■■□□□ 1.172e-14■□□□□ 10
RTN4-201ENST00000317610 CGNQ9P2M7 1197 aaKnown RBP22.38■■□□□ 1.17
RTN4-201ENST00000317610 RBM33Q96EV2 1170 aaKnown RBP22.37■■□□□ 1.17
RTN4-201ENST00000317610 ERBB3P21860 1342 aa22.37■■□□□ 1.17
RTN4-201ENST00000317610 KINO60870 393 aaKnown RBP22.37■■□□□ 1.17
RTN4-201ENST00000317610 APOBRQ0VD83 1088 aa22.37■■□□□ 1.17
RTN4-201ENST00000317610 UBE3BQ7Z3V4 1068 aa22.37■■□□□ 1.17
RTN4-201ENST00000317610 CCZ1BP86790 482 aa22.36■■□□□ 1.17
RTN4-201ENST00000317610 CCZ1P86791 482 aaPredicted RBP22.36■■□□□ 1.17
RTN4-201ENST00000317610 ZNF496Q96IT1 587 aaPredicted RBP22.36■■□□□ 1.17
RTN4-201ENST00000317610 ARID5BQ14865 1188 aa22.36■■□□□ 1.17
RTN4-201ENST00000317610 ILDR1Q86SU0 546 aaPredicted RBP22.36■■□□□ 1.17
RTN4-201ENST00000317610 BECN2A8MW95 431 aa22.35■■□□□ 1.17
RTN4-201ENST00000317610 CHMP4CQ96CF2 233 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms