RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 MEGF6O75095 1541 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 SCN11AQ9UI33 1791 aa25.97■■□□□ 1.75
SHMT1-201ENST00000316694 PTGS1P23219 599 aa25.96■■□□□ 1.75
SHMT1-201ENST00000316694 LRP10Q7Z4F1 713 aa25.96■■□□□ 1.75
SHMT1-201ENST00000316694 ALS2Q96Q42 1657 aa25.95■■□□□ 1.74
SHMT1-201ENST00000316694 AFDNP55196 1824 aaKnown RBP25.95■■□□□ 1.74
SHMT1-201ENST00000316694 RESTQ13127 1097 aa25.95■■□□□ 1.74
SHMT1-201ENST00000316694 HAUS7Q99871 368 aa25.95■■□□□ 1.74
SHMT1-201ENST00000316694 LMTK3Q96Q04 1460 aa25.95■■□□□ 1.74
SHMT1-201ENST00000316694 FAM177BA6PVY3 158 aa25.94■■□□□ 1.74
SHMT1-201ENST00000316694 FOSBP53539 338 aa25.94■■□□□ 1.74
SHMT1-201ENST00000316694 RABL6Q3YEC7 729 aaPredicted RBP25.94■■□□□ 1.74
SHMT1-201ENST00000316694 DRC7Q8IY82 874 aa25.94■■□□□ 1.74
SHMT1-201ENST00000316694 IFNL2Q8IZJ0 200 aa25.94■■□□□ 1.74
SHMT1-201ENST00000316694 CEBPZQ03701 1054 aaKnown RBP25.94■■□□□ 1.74
SHMT1-201ENST00000316694 KIF1AQ12756 1690 aa25.94■■□□□ 1.74
SHMT1-201ENST00000316694 ATF3P18847 181 aa25.93■■□□□ 1.74
SHMT1-201ENST00000316694 CYP27B1O15528 508 aa25.93■■□□□ 1.74
SHMT1-201ENST00000316694 SCRN1Q12765 414 aa25.93■■□□□ 1.74
SHMT1-201ENST00000316694 LMBR1LQ6UX01 489 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 TRIM5Q9C035 493 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 SLFNL1Q499Z3 407 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 RBM43Q6ZSC3 357 aaKnown RBP25.92■■□□□ 1.74
SHMT1-201ENST00000316694 NEUROD6Q96NK8 337 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 FMNL2Q96PY5 1086 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 DNAJC25Q9H1X3 360 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 KIF3AQ9Y496 699 aa25.92■■□□□ 1.74
SHMT1-201ENST00000316694 GTF2F1P35269 517 aaKnown RBP eCLIP25.91■■□□□ 1.74
SHMT1-201ENST00000316694 STOX1Q6ZVD7 989 aa25.91■■□□□ 1.74
SHMT1-201ENST00000316694 RFX7Q2KHR2 1363 aa25.91■■□□□ 1.74
SHMT1-201ENST00000316694 ZNF165P49910 485 aa25.91■■□□□ 1.74
SHMT1-201ENST00000316694 CCDC186Q7Z3E2 898 aa25.91■■□□□ 1.74
SHMT1-201ENST00000316694 CHAF1AQ13111 956 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-201ENST00000316694 KBTBD3Q8NAB2 608 aa25.9■■□□□ 1.74
SHMT1-201ENST00000316694 ZSCAN16Q9H4T2 348 aaPredicted RBP25.9■■□□□ 1.74
SHMT1-201ENST00000316694 CFAP45Q9UL16 551 aa25.9■■□□□ 1.74
SHMT1-201ENST00000316694 GOLIM4O00461 696 aa25.9■■□□□ 1.74
SHMT1-201ENST00000316694 MST1RQ04912 1400 aa25.89■■□□□ 1.74
SHMT1-201ENST00000316694 ZNF710Q8N1W2 664 aa25.89■■□□□ 1.74
SHMT1-201ENST00000316694 NRBP1Q9UHY1 535 aa25.89■■□□□ 1.74
SHMT1-201ENST00000316694 DCAF5Q96JK2 942 aa25.88■■□□□ 1.73
SHMT1-201ENST00000316694 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.88■■□□□ 1.73
SHMT1-201ENST00000316694 NAP1L2Q9ULW6 460 aaPredicted RBP25.88■■□□□ 1.73
SHMT1-201ENST00000316694 ZNF75DP51815 510 aa25.88■■□□□ 1.73
SHMT1-201ENST00000316694 APOBRQ0VD83 1088 aa25.88■■□□□ 1.73
SHMT1-201ENST00000316694 LRMPQ12912 555 aa25.88■■□□□ 1.73
SHMT1-201ENST00000316694 ARFGEF2Q9Y6D5 1785 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 TMEM94Q12767 1356 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 DHX32Q7L7V1 743 aaKnown RBP25.87■■□□□ 1.73
SHMT1-201ENST00000316694 TDRD7Q8NHU6 1098 aaKnown RBP25.87■■□□□ 1.73
SHMT1-201ENST00000316694 SH3TC1Q8TE82 1336 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-201ENST00000316694 PFKFB2O60825 505 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 PPFIA3O75145 1194 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 CASP7P55210 303 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 PLBD2Q8NHP8 589 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 SMARCC2Q8TAQ2 1214 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 FTOQ9C0B1 505 aaKnown RBP eCLIP25.87■■□□□ 1.73
SHMT1-201ENST00000316694 PAG1Q9NWQ8 432 aa25.87■■□□□ 1.73
SHMT1-201ENST00000316694 CABP4P57796 275 aa25.86■■□□□ 1.73
SHMT1-201ENST00000316694 CCT2P78371 535 aaKnown RBP25.86■■□□□ 1.73
SHMT1-201ENST00000316694 COL18A1P39060 1754 aa25.86■■□□□ 1.73
SHMT1-201ENST00000316694 HMGB1P09429 215 aaKnown RBP25.86■■□□□ 1.73
SHMT1-201ENST00000316694 TIMM10P62072 90 aa25.86■■□□□ 1.73
SHMT1-201ENST00000316694 PLA2G4DQ86XP0 818 aa25.86■■□□□ 1.73
SHMT1-201ENST00000316694 NSUN7Q8NE18 718 aaKnown RBP25.86■■□□□ 1.73
SHMT1-201ENST00000316694 PTPDC1A2A3K4 754 aa25.85■■□□□ 1.73
SHMT1-201ENST00000316694 LLPHQ9BRT6 129 aaKnown RBP25.85■■□□□ 1.73
SHMT1-201ENST00000316694 RIOK3O14730 519 aaKnown RBP25.85■■□□□ 1.73
SHMT1-201ENST00000316694 A0A0G2JLW4 131 aa25.84■■□□□ 1.73
SHMT1-201ENST00000316694 LAMA4Q16363 1823 aa25.84■■□□□ 1.73
SHMT1-201ENST00000316694 CTDNEP1O95476 244 aa25.83■■□□□ 1.73
SHMT1-201ENST00000316694 FOXO4P98177 505 aa25.83■■□□□ 1.73
SHMT1-201ENST00000316694 BCL2L12Q9HB09 334 aa25.83■■□□□ 1.73
SHMT1-201ENST00000316694 NCOA5Q9HCD5 579 aaKnown RBP25.83■■□□□ 1.73
SHMT1-201ENST00000316694 ATG9AQ7Z3C6 839 aa25.83■■□□□ 1.73
SHMT1-201ENST00000316694 CCDC94Q9BW85 323 aaPredicted RBP25.83■■□□□ 1.73
SHMT1-201ENST00000316694 ADD1P35611 737 aaKnown RBP25.82■■□□□ 1.72
SHMT1-201ENST00000316694 CCAR1Q8IX12 1150 aaKnown RBP25.82■■□□□ 1.72
SHMT1-201ENST00000316694 HELLSQ9NRZ9 838 aa25.82■■□□□ 1.72
SHMT1-201ENST00000316694 CLIP2Q9UDT6 1046 aa25.82■■□□□ 1.72
SHMT1-201ENST00000316694 NAA16Q6N069 864 aaPredicted RBP25.82■■□□□ 1.72
SHMT1-201ENST00000316694 ZSCAN25Q6NSZ9 544 aa25.82■■□□□ 1.72
SHMT1-201ENST00000316694 CHST3Q7LGC8 479 aa25.82■■□□□ 1.72
SHMT1-201ENST00000316694 PALLDQ8WX93 1383 aa25.82■■□□□ 1.72
SHMT1-201ENST00000316694 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.81■■□□□ 1.72
SHMT1-201ENST00000316694 GOLGA6L19H0YKK7 550 aa25.81■■□□□ 1.72
SHMT1-201ENST00000316694 GUCY1B3Q02153 619 aa25.81■■□□□ 1.72
SHMT1-201ENST00000316694 DSCC1Q9BVC3 393 aa25.81■■□□□ 1.72
SHMT1-201ENST00000316694 E7EWF7 191 aa25.8■■□□□ 1.72
SHMT1-201ENST00000316694 C11orf57Q6ZUT1 292 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-201ENST00000316694 C16orf45Q96MC5 204 aaPredicted RBP25.8■■□□□ 1.72
SHMT1-201ENST00000316694 USP28Q96RU2 1077 aa25.8■■□□□ 1.72
SHMT1-201ENST00000316694 GOLPH3LQ9H4A5 285 aa25.8■■□□□ 1.72
SHMT1-201ENST00000316694 NBPF26B4DH59 902 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 H7C1W4 665 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 HSPD1P10809 573 aaKnown RBP25.79■■□□□ 1.72
SHMT1-201ENST00000316694 EXOSC10Q01780 885 aaKnown RBP25.79■■□□□ 1.72
SHMT1-201ENST00000316694 ZMYM1Q5SVZ6 1142 aa25.79■■□□□ 1.72
SHMT1-201ENST00000316694 NBPF14Q5TI25 921 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms