RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 RNF34Q969K3 372 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.67□□□□□ -0.22
PCF11-201ENST00000298281 PPP1R42Q7Z4L9 355 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 PPANQ9NQ55 473 aaKnown RBP13.67□□□□□ -0.22
PCF11-201ENST00000298281 NSD2O96028 1365 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 LPXNO60711 386 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 PRPHP41219 470 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 SELENOOQ9BVL4 669 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 NUF2Q9BZD4 464 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 RARSP54136 660 aaKnown RBP13.67□□□□□ -0.22
PCF11-201ENST00000298281 TMEM67Q5HYA8 995 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 RASAL2Q9UJF2 1139 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 SSH1Q8WYL5 1049 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 GUCY1B3Q02153 619 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 AKNAD1Q5T1N1 836 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 MFSD6Q6ZSS7 791 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 IRX5P78411 483 aaPredicted RBP13.66□□□□□ -0.22
PCF11-201ENST00000298281 NBPF8Q3BBV2 869 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 MCM10Q7L590 875 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 UQCRFS1P1P0C7P4 283 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 GTF3C6Q969F1 213 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 ATP2A1O14983 1001 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 MGEA5O60502 916 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 IDEP14735 1019 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 ZGPATQ8N5A5 531 aaKnown RBP13.66□□□□□ -0.22
PCF11-201ENST00000298281 NCOA7Q8NI08 942 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 CTAGE1Q96RT6 745 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 TSPY2A6NKD2 308 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 UVSSAQ2YD98 709 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 CCDC114Q96M63 670 aa13.66□□□□□ -0.22
PCF11-201ENST00000298281 EXOC5O00471 708 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 TBCAO75347 108 aaKnown RBP13.65□□□□□ -0.22
PCF11-201ENST00000298281 MRC2Q9UBG0 1479 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 GNAQP50148 359 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 RAB3IPQ96QF0 476 aaPredicted RBP13.65□□□□□ -0.22
PCF11-201ENST00000298281 CCDC110Q8TBZ0 833 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 SPAG1Q07617 926 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 KIFC2Q96AC6 838 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 USP16Q9Y5T5 823 aa13.65□□□□□ -0.22
PCF11-201ENST00000298281 PPFIA2O75334 1257 aa13.65□□□□□ -0.23
PCF11-201ENST00000298281 CLSTN2Q9H4D0 955 aa13.65□□□□□ -0.23
PCF11-201ENST00000298281 PRDM10Q9NQV6 1147 aa13.65□□□□□ -0.23
PCF11-201ENST00000298281 PPP1R12AO14974 1030 aaPredicted RBP13.64□□□□□ -0.23
PCF11-201ENST00000298281 UBE2HP62256 183 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 CRNKL1Q9BZJ0 848 aaKnown RBP13.64□□□□□ -0.23
PCF11-201ENST00000298281 LDHAL6AQ6ZMR3 332 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 IRAK4Q9NWZ3 460 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 NOD1Q9Y239 953 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 KCNA4P22459 653 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 TACC1O75410 805 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 INPP1P49441 399 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 METAP2P50579 478 aaKnown RBP eCLIP13.64□□□□□ -0.233e-7■■■□□ 15.4
PCF11-201ENST00000298281 UAP1Q16222 522 aaPredicted RBP13.64□□□□□ -0.23
PCF11-201ENST00000298281 MPRIPQ6WCQ1 1025 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 PDCD7Q8N8D1 485 aaKnown RBP13.64□□□□□ -0.23
PCF11-201ENST00000298281 PAXBP1Q9Y5B6 917 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 HSPA1LP34931 641 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 ACRBPQ8NEB7 543 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.64□□□□□ -0.234e-7■■■□□ 14.8
PCF11-201ENST00000298281 E7EVH7 732 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 TUBB4BP68371 445 aa13.64□□□□□ -0.23
PCF11-201ENST00000298281 CCDC8Q9H0W5 538 aaPredicted RBP13.64□□□□□ -0.23
PCF11-201ENST00000298281 TRMT1Q9NXH9 659 aaKnown RBP13.64□□□□□ -0.23
PCF11-201ENST00000298281 B4DLN1 442 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 MRPL12P52815 198 aaKnown RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 PPP2R5DQ14738 602 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 SELENOSQ9BQE4 189 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 EXOC1Q9NV70 894 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 CAMSAP2Q08AD1 1489 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 SMIM23A6NLE4 172 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 KRT23Q9C075 422 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 RBM28Q9NW13 759 aaKnown RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 ORC3Q9UBD5 711 aaPredicted RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 PIK3R4Q99570 1358 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 BICDL2A1A5D9 508 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 ATP2A2P16615 1042 aaKnown RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 ZNF165P49910 485 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 ARID5AQ03989 594 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 SETDB1Q15047 1291 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 BMP2KLQ5H9B9 411 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 PPP1R21Q6ZMI0 780 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 FAM114A2Q9NRY5 505 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 PHF8Q9UPP1 1060 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 TIAM1Q13009 1591 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 ARAP1Q96P48 1450 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 ERCC6LQ2NKX8 1250 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 SEC62Q99442 399 aaKnown RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 CNNM2Q9H8M5 875 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 HMGB1P1B2RPK0 211 aaPredicted RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 CYLC1P35663 651 aaPredicted RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 DDX27Q96GQ7 796 aaKnown RBP13.63□□□□□ -0.23
PCF11-201ENST00000298281 NEK1Q96PY6 1258 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 STIM2Q9P246 746 aa13.63□□□□□ -0.23
PCF11-201ENST00000298281 SNW1Q13573 536 aaKnown RBP13.62□□□□□ -0.23
PCF11-201ENST00000298281 WAPLQ7Z5K2 1190 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 LRRC43Q8N309 656 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 RBM27Q9P2N5 1060 aaKnown RBP13.62□□□□□ -0.23
PCF11-201ENST00000298281 AGTPBP1Q9UPW5 1226 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 MIS18AQ9NYP9 233 aa13.62□□□□□ -0.23
PCF11-201ENST00000298281 FAM13AO94988 1023 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms