RNA–Protein interactions for RNA: ENST00000271850.11

TPM3-201, Transcript of tropomyosin 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TPM3, Length 1,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-201ENST00000271850 HS3ST6Q96QI5 342 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 ISCA1Q9BUE6 129 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 WBP1LQ9NX94 342 aa11.74□□□□□ -0.53
TPM3-201ENST00000271850 FAM205CA6NFA0 338 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 ZNF853P0CG23 659 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 HIRAP54198 1017 aaPredicted RBP11.73□□□□□ -0.53
TPM3-201ENST00000271850 LMOD3Q0VAK6 560 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 GRIPAP1Q4V328 841 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 NIM1KQ8IY84 436 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 RUNDC1Q96C34 613 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 GPRC5DQ9NZD1 345 aa11.73□□□□□ -0.53
TPM3-201ENST00000271850 SH3TC1Q8TE82 1336 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 G3V3G9 751 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 GMPSP49915 693 aaPredicted RBP11.72□□□□□ -0.53
TPM3-201ENST00000271850 KIAA2012Q0VF49 1180 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 GRAPQ13588 217 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 SP8Q8IXZ3 490 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 GRAPLQ8TC17 118 aaPredicted RBP11.72□□□□□ -0.53
TPM3-201ENST00000271850 TRPM4Q8TD43 1214 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 CELF1Q92879 486 aaKnown RBP11.72□□□□□ -0.53
TPM3-201ENST00000271850 MBIPQ9NS73 344 aa11.72□□□□□ -0.53
TPM3-201ENST00000271850 TRMT112Q9UI30 125 aaKnown RBP11.72□□□□□ -0.53
TPM3-201ENST00000271850 LAS1LQ9Y4W2 734 aaKnown RBP11.72□□□□□ -0.53
TPM3-201ENST00000271850 WDR33Q9C0J8 1336 aaKnown RBP11.71□□□□□ -0.53
TPM3-201ENST00000271850 ATP5J2-PTCD1G3V325 749 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 BBOX1O75936 387 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 HSPA8P11142 646 aaKnown RBP11.71□□□□□ -0.53
TPM3-201ENST00000271850 DEFB115Q30KQ5 88 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 HSP90AB3PQ58FF7 597 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 HDGFL1Q5TGJ6 251 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 DLK2Q6UY11 383 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 DPP8Q6V1X1 898 aaPredicted RBP11.71□□□□□ -0.53
TPM3-201ENST00000271850 USP50Q70EL3 339 aaPredicted RBP11.71□□□□□ -0.53
TPM3-201ENST00000271850 PLBD2Q8NHP8 589 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 FAM89AQ96GI7 184 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 ZNRF3Q9ULT6 936 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 TRPM7Q96QT4 1865 aa11.71□□□□□ -0.53
TPM3-201ENST00000271850 RAD17O75943 681 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 HOXB7P09629 217 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 LMOD1P29536 600 aaPredicted RBP11.7□□□□□ -0.54
TPM3-201ENST00000271850 LBX1P52954 281 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 DUSP27Q5VZP5 1158 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 MPNDQ8N594 471 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 CFAP44Q96MT7 982 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 VPS33BQ9H267 617 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 PRDM10Q9NQV6 1147 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 PGAP2Q9UHJ9 254 aa11.7□□□□□ -0.54
TPM3-201ENST00000271850 RTL9Q8NET4 1388 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 SCN9AQ15858 1988 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 EGFRP00533 1210 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 SF3B3Q15393 1217 aaKnown RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 CYP4F22Q6NT55 531 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 ANKRD13DQ6ZTN6 518 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 GPR101Q96P66 508 aaPredicted RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 GLIS2Q9BZE0 524 aaPredicted RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 PHAXQ9H814 394 aaKnown RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 PRKRIP1Q9H875 184 aaPredicted RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 KCNQ5Q9NR82 932 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 ADARB2Q9NS39 739 aaKnown RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 POLLQ9UGP5 575 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 ABT1Q9ULW3 272 aaKnown RBP11.69□□□□□ -0.54
TPM3-201ENST00000271850 TLL2Q9Y6L7 1015 aa11.69□□□□□ -0.54
TPM3-201ENST00000271850 CTCFP49711 727 aaPredicted RBP11.68□□□□□ -0.54
TPM3-201ENST00000271850 GPSM2P81274 684 aa11.68□□□□□ -0.54
TPM3-201ENST00000271850 RTL5Q5HYW3 569 aaPredicted RBP11.68□□□□□ -0.54
TPM3-201ENST00000271850 CIAPIN1Q6FI81 312 aa11.68□□□□□ -0.54
TPM3-201ENST00000271850 DDX46Q7L014 1031 aaKnown RBP11.68□□□□□ -0.54
TPM3-201ENST00000271850 CAPNS2Q96L46 248 aa11.68□□□□□ -0.54
TPM3-201ENST00000271850 KRTAP3-3Q9BYR6 98 aa11.68□□□□□ -0.54
TPM3-201ENST00000271850 KRTAP3-2Q9BYR7 98 aa11.68□□□□□ -0.54
TPM3-201ENST00000271850 DBF4Q9UBU7 674 aaPredicted RBP11.68□□□□□ -0.54
TPM3-201ENST00000271850 APAF1O14727 1248 aa11.67□□□□□ -0.54
TPM3-201ENST00000271850 AOC2O75106 756 aa11.67□□□□□ -0.54
TPM3-201ENST00000271850 VASPP50552 380 aaPredicted RBP11.67□□□□□ -0.54
TPM3-201ENST00000271850 TRIM28Q13263 835 aaKnown RBP11.67□□□□□ -0.54
TPM3-201ENST00000271850 PDAP1Q13442 181 aaKnown RBP11.67□□□□□ -0.54
TPM3-201ENST00000271850 CCDC184Q52MB2 194 aa11.67□□□□□ -0.54
TPM3-201ENST00000271850 SUPT20HQ8NEM7 779 aa11.67□□□□□ -0.54
TPM3-201ENST00000271850 DBNDD1Q9H9R9 158 aa11.67□□□□□ -0.54
TPM3-201ENST00000271850 SEC31BQ9NQW1 1179 aa11.67□□□□□ -0.54
TPM3-201ENST00000271850 CDHR2Q9BYE9 1310 aa11.66□□□□□ -0.54
TPM3-201ENST00000271850 PSMD14O00487 310 aa11.66□□□□□ -0.54
TPM3-201ENST00000271850 WDR43Q15061 677 aaKnown RBP eCLIP11.66□□□□□ -0.54
TPM3-201ENST00000271850 SAPCD2Q86UD0 394 aa11.66□□□□□ -0.54
TPM3-201ENST00000271850 C8orf58Q8NAV2 365 aa11.66□□□□□ -0.54
TPM3-201ENST00000271850 JARID2Q92833 1246 aaPredicted RBP11.66□□□□□ -0.54
TPM3-201ENST00000271850 ZIC5Q96T25 663 aa11.66□□□□□ -0.54
TPM3-201ENST00000271850 WTIPA6NIX2 430 aaPredicted RBP11.65□□□□□ -0.54
TPM3-201ENST00000271850 ELL2O00472 640 aaPredicted RBP11.65□□□□□ -0.54
TPM3-201ENST00000271850 IRS4O14654 1257 aaPredicted RBP11.65□□□□□ -0.54
TPM3-201ENST00000271850 CELF2O95319 508 aaKnown RBP11.65□□□□□ -0.54
TPM3-201ENST00000271850 SAMD7Q7Z3H4 446 aa11.65□□□□□ -0.54
TPM3-201ENST00000271850 MICALL2Q8IY33 904 aa11.65□□□□□ -0.54
TPM3-201ENST00000271850 TSPYL6Q8N831 410 aa11.65□□□□□ -0.54
TPM3-201ENST00000271850 IFT57Q9NWB7 429 aa11.65□□□□□ -0.54
TPM3-201ENST00000271850 HYPKQ9NX55 129 aa11.65□□□□□ -0.54
TPM3-201ENST00000271850 CNOT7Q9UIV1 285 aaKnown RBP11.65□□□□□ -0.54
TPM3-201ENST00000271850 ASTN2O75129 1339 aaPredicted RBP11.64□□□□□ -0.55
TPM3-201ENST00000271850 POTEB3A0JP26 581 aa11.64□□□□□ -0.55
TPM3-201ENST00000271850 RIMBP2O15034 1052 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms