RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 HLA-DOAP06340 250 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 ZSWIM4Q9H7M6 989 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 SPINK5Q9NQ38 1064 aaPredicted RBP15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 MCUR1Q96AQ8 359 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 ITIH3Q06033 890 aa15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 EXOSC9Q06265 439 aaKnown RBP15.76■□□□□ 0.11
CCDC88A-201ENST00000263630 E7EVH7 732 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 ZNF165P49910 485 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 TNNC1P63316 161 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 KANK4Q5T7N3 995 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 CCDC94Q9BW85 323 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 LIMCH1Q9UPQ0 1083 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 BAG3O95817 575 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 RILPL1Q5EBL4 403 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 PPP1R12CQ9BZL4 782 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 RPAP2Q8IXW5 612 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 GSDMBQ8TAX9 411 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 RASSF2P50749 326 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 KAT14Q9H8E8 782 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 GGNBP2Q9H3C7 697 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 CABP5Q9NP86 173 aa15.75■□□□□ 0.11
CCDC88A-201ENST00000263630 HDXQ7Z353 690 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 FAM13AO94988 1023 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 WHAMMP3Q1A5X7 153 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 EIF2AQ9BY44 585 aaKnown RBP15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 SOGA1O94964 1423 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 CROCCP2Q86T23 111 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 CCDC65Q8IXS2 484 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 VPS18Q9P253 973 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 MAP3K7CLP57077 242 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 CCDC38Q502W7 563 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 PSMA7O14818 248 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 ESCO1Q5FWF5 840 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 FERMT3Q86UX7 667 aa15.74■□□□□ 0.11
CCDC88A-201ENST00000263630 BCAR3O75815 825 aa15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 SLC8A3P57103 927 aa15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 SEL1L2Q5TEA6 688 aa15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 ARHGEF2Q92974 986 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 CCDC25Q86WR0 208 aa15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 RPGRQ92834 1020 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 RNF10Q8N5U6 811 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 DDX54Q8TDD1 881 aaKnown RBP15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 AGTPBP1Q9UPW5 1226 aa15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 UBLCP1Q8WVY7 318 aaPredicted RBP15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 ZC4H2Q9NQZ6 224 aa15.73■□□□□ 0.11
CCDC88A-201ENST00000263630 PDCD2Q16342 344 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 NAA16Q6N069 864 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 KIFC2Q96AC6 838 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 CLNS1AP54105 237 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 MUM1L1Q5H9M0 696 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 ZNF530Q6P9A1 599 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 TMEM110-MUSTN1A8MSY1 372 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 BIRC2Q13490 618 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 RUFY3Q7L099 469 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 ZNF692Q9BU19 519 aaPredicted RBP15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 I3L4J1 428 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 IARSP41252 1262 aaKnown RBP15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 SYKP43405 635 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 KIFAP3Q92845 792 aa15.72■□□□□ 0.11
CCDC88A-201ENST00000263630 HMGB3O15347 200 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 SLC4A8Q2Y0W8 1093 aa15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 MX1P20591 662 aa15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 UTP11Q9Y3A2 253 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 Q9H521 79 aa15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 ACTN4O43707 911 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 IFIT5Q13325 482 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 PRPF40BQ6NWY9 871 aaKnown RBP15.71■□□□□ 0.11
CCDC88A-201ENST00000263630 BIN1O00499 593 aa15.71■□□□□ 0.1
CCDC88A-201ENST00000263630 ADAMTS8Q9UP79 889 aa15.71■□□□□ 0.1
CCDC88A-201ENST00000263630 PPFIA1Q13136 1202 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 PSMD6Q15008 389 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 TMEM67Q5HYA8 995 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 TMCO4Q5TGY1 634 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 NEK11Q8NG66 645 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 ARHGAP25P42331 645 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 KCNG4Q8TDN1 519 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 CABP2Q9NPB3 220 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 GUCY1B3Q02153 619 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 MCM10Q7L590 875 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 ATP2A3Q93084 1043 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 FAN1Q9Y2M0 1017 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 RASA3Q14644 834 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 RAD54L2Q9Y4B4 1467 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 VTI1AQ96AJ9 217 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 FAM204AQ9H8W3 233 aa15.7■□□□□ 0.1
CCDC88A-201ENST00000263630 SMIM23A6NLE4 172 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 METAP2P50579 478 aaKnown RBP eCLIP15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 HMG20BQ9P0W2 317 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 SMARCA2P51531 1590 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 KRT3P12035 628 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 AFG3L2Q9Y4W6 797 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 GJC1P36383 396 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 LGSNQ5TDP6 509 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 GBP5Q96PP8 586 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 LDHCP07864 332 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 ZNF131P52739 623 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 MFSD6Q6ZSS7 791 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 PDCD7Q8N8D1 485 aaKnown RBP15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 CCDC42Q96M95 316 aa15.69■□□□□ 0.1
CCDC88A-201ENST00000263630 SMIM24O75264 130 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms