RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 SPATA31A3Q5VYP0 1347 aa15.33■□□□□ 0.05
SNX1-201ENST00000261889 NPHP3Q7Z494 1330 aa15.33■□□□□ 0.05
SNX1-201ENST00000261889 ADCY9O60503 1353 aa15.33■□□□□ 0.05
SNX1-201ENST00000261889 MTERF4Q7Z6M4 381 aaKnown RBP15.33■□□□□ 0.04
SNX1-201ENST00000261889 GOLPH3LQ9H4A5 285 aa15.33■□□□□ 0.04
SNX1-201ENST00000261889 NCAPD2Q15021 1401 aa15.33■□□□□ 0.04
SNX1-201ENST00000261889 POLR3DP05423 398 aaPredicted RBP15.33■□□□□ 0.04
SNX1-201ENST00000261889 GOLGA6L19H0YKK7 550 aa15.32■□□□□ 0.04
SNX1-201ENST00000261889 HAND2P61296 217 aa15.32■□□□□ 0.04
SNX1-201ENST00000261889 EPC1Q9H2F5 836 aa15.32■□□□□ 0.04
SNX1-201ENST00000261889 BECN2A8MW95 431 aa15.32■□□□□ 0.04
SNX1-201ENST00000261889 ZFP91Q96JP5 570 aaPredicted RBP15.32■□□□□ 0.04
SNX1-201ENST00000261889 NEUROD6Q96NK8 337 aa15.32■□□□□ 0.04
SNX1-201ENST00000261889 LETM1O95202 739 aaPredicted RBP15.32■□□□□ 0.04
SNX1-201ENST00000261889 AOPEPQ8N6M6 819 aa15.32■□□□□ 0.04
SNX1-201ENST00000261889 GOLGB1Q14789 3259 aaKnown RBP15.31■□□□□ 0.04
SNX1-201ENST00000261889 A0A1B0GVL5 298 aa15.31■□□□□ 0.04
SNX1-201ENST00000261889 SKILP12757 684 aa15.31■□□□□ 0.04
SNX1-201ENST00000261889 RIC3Q7Z5B4 369 aa15.31■□□□□ 0.04
SNX1-201ENST00000261889 ZNF330Q9Y3S2 320 aaPredicted RBP15.31■□□□□ 0.04
SNX1-201ENST00000261889 NRAPQ86VF7 1730 aa15.31■□□□□ 0.04
SNX1-201ENST00000261889 ME1P48163 572 aa15.31■□□□□ 0.04
SNX1-201ENST00000261889 CERKQ8TCT0 537 aa15.31■□□□□ 0.04
SNX1-201ENST00000261889 CCAR1Q8IX12 1150 aaKnown RBP15.3■□□□□ 0.04
SNX1-201ENST00000261889 GTF3C6Q969F1 213 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 RPS6KB1P23443 525 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 CEP135Q66GS9 1140 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 TTLL5Q6EMB2 1281 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 MYD88Q99836 296 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 COL15A1P39059 1388 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 RGPD2P0DJD1 1756 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 KRT28Q7Z3Y7 464 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 MAP4K1Q92918 833 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 EVI5LQ96CN4 794 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 USP28Q96RU2 1077 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 SNRKQ9NRH2 765 aa15.3■□□□□ 0.04
SNX1-201ENST00000261889 GTF2F1P35269 517 aaKnown RBP eCLIP15.29■□□□□ 0.04
SNX1-201ENST00000261889 GPATCH3Q96I76 525 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 DBNDD2Q9BQY9 259 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 ARHGEF10O15013 1369 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 CCDC69A6NI79 296 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 SMC2O95347 1197 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 SCRN1Q12765 414 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 TFCP2Q12800 502 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 WNK3Q9BYP7 1800 aa15.29■□□□□ 0.04
SNX1-201ENST00000261889 RXRAP19793 462 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 SH2B1Q9NRF2 756 aaPredicted RBP15.28■□□□□ 0.04
SNX1-201ENST00000261889 CPDO75976 1380 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 STOX1Q6ZVD7 989 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 UBE3BQ7Z3V4 1068 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 CLSTN2Q9H4D0 955 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 CYP21A2P08686 494 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 KMT5BQ4FZB7 885 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 PLCH1Q4KWH8 1693 aa15.28■□□□□ 0.04
SNX1-201ENST00000261889 ANKRD7Q92527 254 aa15.27■□□□□ 0.04
SNX1-201ENST00000261889 DBNLQ9UJU6 430 aaKnown RBP15.27■□□□□ 0.04
SNX1-201ENST00000261889 COL14A1Q05707 1796 aaKnown RBP15.27■□□□□ 0.04
SNX1-201ENST00000261889 TIMM10P62072 90 aa15.27■□□□□ 0.04
SNX1-201ENST00000261889 ZSCAN31Q96LW9 406 aaPredicted RBP15.27■□□□□ 0.04
SNX1-201ENST00000261889 NWD2Q9ULI1 1742 aa15.27■□□□□ 0.03
SNX1-201ENST00000261889 GRM8O00222 908 aa15.27■□□□□ 0.03
SNX1-201ENST00000261889 ZC3H6P61129 1189 aaKnown RBP15.27■□□□□ 0.03
SNX1-201ENST00000261889 FSIP1Q8NA03 581 aa15.27■□□□□ 0.03
SNX1-201ENST00000261889 SDF4Q9BRK5 362 aa15.27■□□□□ 0.03
SNX1-201ENST00000261889 GOLIM4O00461 696 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 ERCC6LQ2NKX8 1250 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 FBXO38Q6PIJ6 1188 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 DDX17Q92841 729 aaKnown RBP15.26■□□□□ 0.03
SNX1-201ENST00000261889 CTNNA3Q9UI47 895 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 PSME1Q06323 249 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 LRRC8AQ8IWT6 810 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 NEK1Q96PY6 1258 aa15.26■□□□□ 0.03
SNX1-201ENST00000261889 TAF5LO75529 589 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 IGKV5-2P06315 115 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 PTPN14Q15678 1187 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 PLA2G4DQ86XP0 818 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 SYT10Q6XYQ8 523 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 COPS6Q7L5N1 327 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 XAGE3Q8WTP9 111 aa15.25■□□□□ 0.03
SNX1-201ENST00000261889 ZNF594Q96JF6 807 aaPredicted RBP15.25■□□□□ 0.03
SNX1-201ENST00000261889 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.25■□□□□ 0.03
SNX1-201ENST00000261889 LMOD1P29536 600 aaPredicted RBP15.25■□□□□ 0.03
SNX1-201ENST00000261889 SCAND2PQ9GZW5 306 aaPredicted RBP15.25■□□□□ 0.03
SNX1-201ENST00000261889 DBF4Q9UBU7 674 aaPredicted RBP15.25■□□□□ 0.03
SNX1-201ENST00000261889 PSMA5P28066 241 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 MARCKSP29966 332 aaPredicted RBP15.24■□□□□ 0.03
SNX1-201ENST00000261889 DPCR1Q3MIW9 517 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 DENND2AQ9ULE3 1009 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 PTPDC1A2A3K4 754 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 POLR3GO15318 223 aaPredicted RBP15.24■□□□□ 0.03
SNX1-201ENST00000261889 RESTQ13127 1097 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 TMC6Q7Z403 805 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 AOX1Q06278 1338 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 TTC41PQ6P2S7 1318 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 KDRP35968 1356 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 CTIFO43310 598 aaKnown RBP15.24■□□□□ 0.03
SNX1-201ENST00000261889 HSP90AB4PQ58FF6 505 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 C1orf141Q5JVX7 400 aa15.24■□□□□ 0.03
SNX1-201ENST00000261889 GIGYF1O75420 1035 aaPredicted RBP15.23■□□□□ 0.03
SNX1-201ENST00000261889 RNF20Q5VTR2 975 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms