RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 KCNK9Q9NPC2 374 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 TXNDC9O14530 226 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 GBP1P32455 592 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 GOLGA1Q92805 767 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 EPSTI1Q96J88 318 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 HGSO14964 777 aaPredicted RBP12.59□□□□□ -0.39
MSH6-201ENST00000234420 TSPY3P0CV98 308 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 TSPY8P0CW00 308 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 NEDD9Q14511 834 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 PFDN4Q9NQP4 134 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 TTLL3Q9Y4R7 772 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 CEP131Q9UPN4 1083 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 RHOXF2BP0C7M4 288 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 CCDC24Q8N4L8 307 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 TTC14Q96N46 770 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 RHOXF2Q9BQY4 288 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 FRMD3A2A2Y4 597 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 HCLS1P14317 486 aaPredicted RBP12.59□□□□□ -0.39
MSH6-201ENST00000234420 MTIF2P46199 727 aaKnown RBP12.59□□□□□ -0.39
MSH6-201ENST00000234420 HAND2P61296 217 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 CCDC8Q9H0W5 538 aaPredicted RBP12.59□□□□□ -0.39
MSH6-201ENST00000234420 SNRKQ9NRH2 765 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 SAP30BPQ9UHR5 308 aaKnown RBP12.59□□□□□ -0.39
MSH6-201ENST00000234420 ABT1Q9ULW3 272 aaKnown RBP12.59□□□□□ -0.39
MSH6-201ENST00000234420 TSPOAP1O95153 1857 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 TLDC2A0PJX2 215 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 SKILP12757 684 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 ZNF165P49910 485 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 ZNF365Q70YC5 407 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 MIER3Q7Z3K6 550 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 VCXQ9H320 206 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 TTC12Q9H892 705 aaPredicted RBP12.58□□□□□ -0.39
MSH6-201ENST00000234420 WIZO95785 1651 aa12.58□□□□□ -0.39
MSH6-201ENST00000234420 CIB2O75838 187 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 GNAI3P08754 354 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 PSMD6Q15008 389 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 GNAT3A8MTJ3 354 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 PPARDQ03181 441 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 CNNM3Q8NE01 707 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 KAT14Q9H8E8 782 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 BICDL2A1A5D9 508 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 SATB1Q01826 763 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 FERMT1Q9BQL6 677 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 SLC12A7Q9Y666 1083 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 USP47Q96K76 1375 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 ZSCAN23Q3MJ62 389 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 INTS8Q75QN2 995 aaKnown RBP12.58□□□□□ -0.4
MSH6-201ENST00000234420 RUFY3Q7L099 469 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 MAEAQ7L5Y9 396 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 IQCA1Q86XH1 822 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.58□□□□□ -0.4
MSH6-201ENST00000234420 USH1CQ9Y6N9 552 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 STX1AQ16623 288 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 GEN1Q17RS7 908 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 CHD1LQ86WJ1 897 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 CAPZA3Q96KX2 299 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 HINFPQ9BQA5 517 aa12.58□□□□□ -0.4
MSH6-201ENST00000234420 DBN1Q16643 649 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 CCDC38Q502W7 563 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 B4GALNT4Q76KP1 1039 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 IFIT3O14879 490 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 SMARCA5O60264 1052 aaPredicted RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 VIMP08670 466 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 IRX5P78411 483 aaPredicted RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 MAP3K12Q12852 859 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 CHST3Q7LGC8 479 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 HEATR3Q7Z4Q2 680 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 CABLES1Q8TDN4 633 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 XAB2Q9HCS7 855 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 LMTK3Q96Q04 1460 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 COG7P83436 770 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 TSNAXIP1Q2TAA8 658 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 CATIPQ7Z7H3 387 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 CTCFLQ8NI51 663 aaPredicted RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 SCAND2PQ9GZW5 306 aaPredicted RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 FMN1Q68DA7 1419 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 ZNF644Q9H582 1327 aaPredicted RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 RIOK3O14730 519 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 FGFR1OPO95684 399 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 IDEP14735 1019 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 SNX16P57768 344 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 SMC1BQ8NDV3 1235 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 TACO1Q9BSH4 297 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 PRKAG2Q9UGJ0 569 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 CTAGE5O15320 804 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 ZBTB17Q13105 803 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 XRCC6P12956 609 aaKnown RBP eCLIP12.57□□□□□ -0.42e-10■■□□□ 12.2
MSH6-201ENST00000234420 SSRP1Q08945 709 aaKnown RBP12.57□□□□□ -0.4
MSH6-201ENST00000234420 KRT28Q7Z3Y7 464 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 IFT81Q8WYA0 676 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 SEPT8Q92599 483 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 GBP5Q96PP8 586 aa12.57□□□□□ -0.4
MSH6-201ENST00000234420 VPS41P49754 854 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 CFAP70Q5T0N1 1121 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 FSIP1Q8NA03 581 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 EXOSC9Q06265 439 aaKnown RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 CUL4BQ13620 913 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 CCDC186Q7Z3E2 898 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 CCDC110Q8TBZ0 833 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 MRFAP1L1Q96HT8 127 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms