RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 FBXW10Q5XX13 1052 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 CNNM3Q8NE01 707 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 BCCIPQ9P287 314 aaKnown RBP eCLIP16.99■□□□□ 0.31
PTPRA-201ENST00000216877 C3P01024 1663 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 SURF6O75683 361 aaKnown RBP16.98■□□□□ 0.31
PTPRA-201ENST00000216877 CFAP100Q494V2 611 aa16.98■□□□□ 0.31
PTPRA-201ENST00000216877 CCDC12Q8WUD4 166 aaPredicted RBP16.98■□□□□ 0.31
PTPRA-201ENST00000216877 IQSEC2Q5JU85 1478 aa16.98■□□□□ 0.31
PTPRA-201ENST00000216877 GBP6Q6ZN66 633 aa16.98■□□□□ 0.31
PTPRA-201ENST00000216877 TERF2IPQ9NYB0 399 aa16.98■□□□□ 0.31
PTPRA-201ENST00000216877 PPP6R1Q9UPN7 881 aa16.98■□□□□ 0.31
PTPRA-201ENST00000216877 DONSONQ9NYP3 566 aa16.98■□□□□ 0.31
PTPRA-201ENST00000216877 MSH6P52701 1360 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 GNAI2P04899 355 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 GPR161Q8N6U8 529 aaKnown RBP16.97■□□□□ 0.31
PTPRA-201ENST00000216877 SHPRHQ149N8 1683 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 NEBLO76041 1014 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 GUCY1B3Q02153 619 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 NBPF11Q86T75 865 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 CCDC150Q8NCX0 1101 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 HDGFL2Q7Z4V5 671 aaPredicted RBP16.97■□□□□ 0.31
PTPRA-201ENST00000216877 TADA2BQ86TJ2 420 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 GDAP1L1Q96MZ0 367 aa16.97■□□□□ 0.31
PTPRA-201ENST00000216877 FCHSD2O94868 740 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 CDC25BP30305 580 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 IQCB1Q15051 598 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 SAMD1Q6SPF0 538 aaPredicted RBP16.96■□□□□ 0.31
PTPRA-201ENST00000216877 GOLGA1Q92805 767 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 PGBD1Q96JS3 809 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 FTOQ9C0B1 505 aaKnown RBP eCLIP16.96■□□□□ 0.31
PTPRA-201ENST00000216877 ARMCX5Q6P1M9 558 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 RBM33Q96EV2 1170 aaKnown RBP16.96■□□□□ 0.31
PTPRA-201ENST00000216877 ZSCAN31Q96LW9 406 aaPredicted RBP16.96■□□□□ 0.31
PTPRA-201ENST00000216877 FUT8Q9BYC5 575 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 PDE6BP35913 854 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 USP8P40818 1118 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 ATP2B2Q01814 1243 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 IDI1Q13907 227 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 FSIP1Q8NA03 581 aa16.96■□□□□ 0.31
PTPRA-201ENST00000216877 LTV1Q96GA3 475 aaPredicted RBP16.96■□□□□ 0.31
PTPRA-201ENST00000216877 ANKRD26Q9UPS8 1709 aa16.96■□□□□ 0.3
PTPRA-201ENST00000216877 FRMD3A2A2Y4 597 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 APOBRQ0VD83 1088 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 HYPKQ9NX55 129 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 CCP110O43303 1012 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 ERLIN1O75477 346 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 SCP2P22307 547 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 CORO7P57737 925 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 SATB1Q01826 763 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 BIRC2Q13490 618 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 TXNDC2Q86VQ3 553 aa16.95■□□□□ 0.3
PTPRA-201ENST00000216877 TMED8Q6PL24 325 aaPredicted RBP16.95■□□□□ 0.3
PTPRA-201ENST00000216877 SH2B1Q9NRF2 756 aaPredicted RBP16.95■□□□□ 0.3
PTPRA-201ENST00000216877 ERVK-7P63135 1459 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 PRAM1Q96QH2 718 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 CARD10Q9BWT7 1032 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 ACBD3Q9H3P7 528 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 CCT5P48643 541 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 HDXQ7Z353 690 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 FAM204AQ9H8W3 233 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 PNMA6EA0A0J9YXQ4 647 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 ATP8B1O43520 1251 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 PTPRMP28827 1452 aa16.94■□□□□ 0.3
PTPRA-201ENST00000216877 CAVIN2O95810 425 aa16.93■□□□□ 0.3
PTPRA-201ENST00000216877 CCDC93Q567U6 631 aa16.93■□□□□ 0.3
PTPRA-201ENST00000216877 NUTM2GQ5VZR2 741 aa16.93■□□□□ 0.3
PTPRA-201ENST00000216877 CNTROBQ8N137 903 aa16.93■□□□□ 0.3
PTPRA-201ENST00000216877 MKRN1Q9UHC7 482 aaKnown RBP16.93■□□□□ 0.3
PTPRA-201ENST00000216877 WDHD1O75717 1129 aaPredicted RBP16.93■□□□□ 0.3
PTPRA-201ENST00000216877 EFCAB13Q8IY85 973 aa16.93■□□□□ 0.3
PTPRA-201ENST00000216877 SMARCC1Q92922 1105 aaPredicted RBP16.93■□□□□ 0.3
PTPRA-201ENST00000216877 TPCN1Q9ULQ1 816 aa16.93■□□□□ 0.3
PTPRA-201ENST00000216877 HDGFP51858 240 aaKnown RBP16.93■□□□□ 0.3
PTPRA-201ENST00000216877 PSDA5PKW4 1024 aaPredicted RBP16.92■□□□□ 0.3
PTPRA-201ENST00000216877 ZSCAN12O43309 604 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 ZNF853P0CG23 659 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 PLEKHO1Q53GL0 409 aaPredicted RBP16.92■□□□□ 0.3
PTPRA-201ENST00000216877 LZTFL1Q9NQ48 299 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 JAK2O60674 1132 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 WDR24Q96S15 920 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 A0A087WUV0 522 aaPredicted RBP16.92■□□□□ 0.3
PTPRA-201ENST00000216877 AKAP17AQ02040 695 aaKnown RBP16.92■□□□□ 0.3
PTPRA-201ENST00000216877 MCM10Q7L590 875 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 BRF1Q92994 677 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 DHX58Q96C10 678 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 DESI2Q9BSY9 194 aa16.92■□□□□ 0.3
PTPRA-201ENST00000216877 TSGA10IPQ3SY00 556 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 LRRC31Q6UY01 552 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 TTC14Q96N46 770 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 AKAP2Q9Y2D5 859 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 TOP1P11387 765 aaKnown RBP16.91■□□□□ 0.3
PTPRA-201ENST00000216877 KIF4BQ2VIQ3 1234 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 SARM1Q6SZW1 724 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 NGDNQ8NEJ9 315 aaKnown RBP16.91■□□□□ 0.3
PTPRA-201ENST00000216877 CFAP45Q9UL16 551 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 EBAG9O00559 213 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 SGSM2O43147 1006 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 CHMP4BP1P59074 171 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 G2E3Q7L622 706 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 WAPLQ7Z5K2 1190 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms