RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 CPNE4Q96A23 557 aaPredicted RBP12.29□□□□□ -0.44
TPM1-215ENST00000558868 SMIM19Q96E16 107 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 TM9SF2Q99805 663 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 EMC6Q9BV81 110 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 MFRPQ9BY79 579 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 HES7Q9BYE0 225 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 NXF2Q9GZY0 626 aaKnown RBP12.29□□□□□ -0.44
TPM1-215ENST00000558868 RNF167Q9H6Y7 350 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 ACKR4Q9NPB9 350 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 PAQR5Q9NXK6 330 aaPredicted RBP12.29□□□□□ -0.44
TPM1-215ENST00000558868 GALNT8Q9NY28 637 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 CRNNQ9UBG3 495 aaPredicted RBP12.29□□□□□ -0.44
TPM1-215ENST00000558868 ST6GALNAC2Q9UJ37 374 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 KCNG2Q9UJ96 466 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 IKZF2Q9UKS7 526 aa12.29□□□□□ -0.44
TPM1-215ENST00000558868 TRBV2A0A0J9YWF9 115 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 E9PI62 339 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 ACTL6AO96019 429 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 SPARCP09486 303 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 LAP3P28838 519 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 GDI2P50395 445 aaKnown RBP12.28□□□□□ -0.44
TPM1-215ENST00000558868 TNFSF10P50591 281 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 CLDN17P56750 224 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 CLDN20P56880 219 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 SLC3A1Q07837 685 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 CAMK2DQ13557 499 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 SLC17A1Q14916 467 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 SLC10A1Q14973 349 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 DEFB109BQ30KR1 87 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 FAM109AQ8N4B1 249 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 RFLNBQ8N5W9 214 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 TMEM251Q8N6I4 163 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 SLC26A10Q8NG04 563 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 OR6Q1Q8NGQ2 317 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 PHYHIPQ92561 330 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 ADGRG7Q96K78 797 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 HDHD5Q9BXW7 423 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 PLGRKTQ9HBL7 147 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 HMG20AQ9NP66 347 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 MRPL22Q9NWU5 206 aaKnown RBP12.28□□□□□ -0.44
TPM1-215ENST00000558868 PEX16Q9Y5Y5 336 aa12.28□□□□□ -0.44
TPM1-215ENST00000558868 SIRT4Q9Y6E7 314 aaPredicted RBP12.28□□□□□ -0.44
TPM1-215ENST00000558868 A0A075B6Q4 140 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ARPC4-TTLL3A0A0A6YYG9 625 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 FAM166BA8MTA8 275 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 SMAD9O15198 467 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 CXCL13O43927 109 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ZNF254O75437 659 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 CEACAM4O75871 244 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 GATBO75879 557 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 CDRT1O95170 752 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 WT1P19544 449 aaPredicted RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 S100A5P33763 92 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 RPS19P39019 145 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 GUCA1AP43080 201 aaPredicted RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 MAGEA5P43359 124 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 EIF1AXP47813 144 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 CSNK1A1P48729 337 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ROM1Q03395 351 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 FMODQ06828 376 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 SRSF6Q13247 344 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 DCTN2Q13561 401 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 EIF2B1Q14232 305 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 ZNF846Q147U1 533 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ETFDHQ16134 617 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 HIST3H3Q16695 136 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 PCK2Q16822 640 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 SLC25A47Q6Q0C1 308 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 UBQLNLQ8IYU4 475 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ZNF679Q8IYX0 411 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 FDCSPQ8NFU4 85 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 OR6N1Q8NGY5 312 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 OR10D3Q8NH80 312 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ABHD4Q8TB40 342 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 GHSRQ92847 366 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 TRMT61AQ96FX7 289 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 OR8B4Q96RC9 309 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 CDADC1Q9BWV3 514 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 MROQ9BYG7 248 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 SRXN1Q9BYN0 137 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 TTTY10Q9BZA0 68 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 WDR12Q9GZL7 423 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 SNTG1Q9NSN8 517 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 ACOXLQ9NUZ1 547 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 MRM2Q9UI43 246 aaKnown RBP12.27□□□□□ -0.45
TPM1-215ENST00000558868 RCE1Q9Y256 329 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 KLHDC2Q9Y2U9 406 aa12.27□□□□□ -0.45
TPM1-215ENST00000558868 TRAV17A0A0B4J275 112 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 DCDC2BA2VCK2 349 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 CD8B2A6NJW9 211 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 RAMP1O60894 148 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 ZNF432O94892 652 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 SYNGR4O95473 234 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 GPANK1O95872 356 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 OR8G3PP0DMU2 310 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 CD8BP10966 210 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 MTNR1BP49286 362 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 STARP49675 285 aa12.26□□□□□ -0.45
TPM1-215ENST00000558868 SUCLG1P53597 346 aaKnown RBP12.26□□□□□ -0.45
TPM1-215ENST00000558868 FOXC1Q12948 553 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms