RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IGF2P01344 180 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CD74P04233 296 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ITGB2P05107 769 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CD5P06127 495 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SBK2P0C263 348 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR8U8P0C7N1 319 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 LYL1P12980 280 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 S1PR1P21453 382 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 DRD5P21918 477 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 DPP4P27487 766 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CSF2RBP32927 897 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CDX1P47902 265 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 PTH2RP49190 550 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CAV2P51636 162 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 NXPH1P58417 271 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ACTA2P62736 377 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ACTG2P63267 376 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PTSQ03393 145 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 RHEBQ15382 184 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SSX2Q16385 188 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SPDYE7PQ495Y7 208 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ZNF385BQ569K4 471 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ZNF311Q5JNZ3 666 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CEACAM19Q7Z692 300 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ZNF546Q86UE3 836 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 DCUN1D3Q8IWE4 304 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR5D16Q8NGK9 328 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR1S2Q8NGQ3 325 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR5J2Q8NH18 312 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR5R1Q8NH85 324 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PIGXQ8TBF5 258 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 WFDC12Q8WWY7 111 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 MIB2Q96AX9 1013 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 S100A16Q96FQ6 103 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 C14orf144Q96I85 54 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SMIM8Q96KF7 97 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 LINC00615Q96LM1 132 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 FER1L6-AS2Q96M78 137 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ARHGDIGQ99819 225 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 GGACTQ9BVM4 153 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SMDT1Q9H4I9 107 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 APMAPQ9HDC9 416 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ZDHHC3Q9NYG2 299 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 H2AFY2Q9P0M6 372 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 P2RX2Q9UBL9 471 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 FOXJ3Q9UPW0 622 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SLC17A4Q9Y2C5 497 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 USP34Q70CQ2 3546 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 TEX13DA0A0J9YY54 714 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 ADAM10O14672 748 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CD14P08571 375 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CYC1P08574 325 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 VSIG10L2P0DP72 767 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 NDUFS1P28331 727 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OMPP47874 163 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PPP2CBP62714 309 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PPP2CAP67775 309 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 IRF8Q02556 426 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 FABP9Q0Z7S8 132 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 NAE1Q13564 534 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CNN3Q15417 329 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 ACSM3Q53FZ2 586 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 EIF5AL1Q6IS14 154 aaKnown RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 CMTM4Q8IZR5 234 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 LNX2Q8N448 690 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 IQCF1Q8N6M8 205 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 RNF152Q8N8N0 203 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 OR52I2Q8NH67 350 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 LYPD6BQ8NI32 183 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 STT3BQ8TCJ2 826 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 LKAAEAR1Q8TD35 194 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SLC38A5Q8WUX1 472 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 NUDCD2Q8WVJ2 157 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ACOT11Q8WXI4 607 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 UBE2E3Q969T4 207 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SMIM19Q96E16 107 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SAMD8Q96LT4 415 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 EBPLQ9BY08 206 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SLCO5A1Q9H2Y9 848 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 RIMS4Q9H426 269 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 SUSD2Q9UGT4 822 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 ST6GALNAC2Q9UJ37 374 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 WIF1Q9Y5W5 379 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 MYO15AQ9UKN7 3530 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 TRAV34A0A0B4J273 112 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 A0A1W2PN81 502 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 NPIPB15A6NHN6 443 aaPredicted RBP4.78□□□□□ -1.64
USP28-213ENST00000544967 LDLRAD4O15165 306 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PRAMEF4O60810 478 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SLC25A12O75746 678 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 IFNA17P01571 189 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CHRNA7P36544 502 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 NPBWR1P48145 328 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 P2RX1P51575 399 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 CHAF1BQ13112 559 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 BIKQ13323 160 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 GGTLC2Q14390 218 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 SLC25A35Q3KQZ1 300 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 PRAMEF9Q5VWM5 478 aa4.78□□□□□ -1.64
USP28-213ENST00000544967 HEPHL1Q6MZM0 1159 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms