RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SEC61A2Q9H9S3 476 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 SLC17A5Q9NRA2 495 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 NDRG3Q9UGV2 375 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 COA3Q9Y2R0 106 aaPredicted RBP25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 FKBP7Q9Y680 259 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 A0A1W2PR80 420 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 PRKYO43930 277 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 GYPBP06028 91 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 MRPS34P82930 218 aaKnown RBP25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 TAB1Q15750 504 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 ZBTB46Q86UZ6 589 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 GLB1L2Q8IW92 636 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 SLC22A24Q8N4F4 322 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 ACBD4Q8NC06 268 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 PROKR2Q8NFJ6 384 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 OR2T4Q8NH00 348 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 NABP1Q96AH0 204 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 BOD1Q96IK1 185 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 HRASLS5Q96KN8 279 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 USB1Q9BQ65 265 aaKnown RBP25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 HINT3Q9NQE9 182 aaKnown RBP25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 B9D1Q9UPM9 204 aa25.93■■□□□ 1.74
LIMCH1-211ENST00000509638 CLUP10909 449 aa25.92■■□□□ 1.74
LIMCH1-211ENST00000509638 SLC25A1P53007 311 aa25.92■■□□□ 1.74
LIMCH1-211ENST00000509638 PLBD1Q6P4A8 553 aa25.92■■□□□ 1.74
LIMCH1-211ENST00000509638 FOXL2NBQ6ZUU3 175 aa25.92■■□□□ 1.74
LIMCH1-211ENST00000509638 P2RY8Q86VZ1 359 aa25.92■■□□□ 1.74
LIMCH1-211ENST00000509638 FAM81AQ8TBF8 368 aa25.92■■□□□ 1.74
LIMCH1-211ENST00000509638 FAM171A2A8MVW0 826 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 PRR23D1E9PI22 279 aaPredicted RBP25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 E9PQ18 207 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 PRR23D2P0DMB1 279 aaPredicted RBP25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 SPI1P17947 270 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 PYCR1P32322 319 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 GGT2P36268 569 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 KIR2DL3P43628 341 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 PTDSS1P48651 473 aaKnown RBP25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 CENPAP49450 140 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 UBE2NP61088 152 aaKnown RBP25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 NRN1LQ496H8 165 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 ALKBH2Q6NS38 261 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 PITX2Q99697 317 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 FAM118AQ9NWS6 357 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 CRIM1Q9NZV1 1036 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 PLEKHB1Q9UF11 243 aaPredicted RBP25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 DCHS2Q6V1P9 2916 aa25.91■■□□□ 1.74
LIMCH1-211ENST00000509638 FARS2O95363 451 aaKnown RBP25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 GPANK1O95872 356 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 THBDP07204 575 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 OR8G3PP0DMU2 310 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 NPR2P20594 1047 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 GUCA1AP43080 201 aaPredicted RBP25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 CAPZA2P47755 286 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 CDC42P60953 191 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 TUBA1BP68363 451 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 TUBA4AP68366 448 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 GLO1Q04760 184 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 SGCAQ16586 387 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 FBXW10Q5XX13 1052 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 TUBA1AQ71U36 451 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 CPOQ8IVL8 374 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 TCEANCQ8N8B7 351 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 WDR31Q8NA23 367 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 OR51L1Q8NGJ5 315 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 HSD17B8Q92506 261 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 SH3GL3Q99963 347 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 POLE4Q9NR33 117 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 IMPAD1Q9NX62 359 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 NDRG4Q9ULP0 352 aaKnown RBP25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 AMDHD2Q9Y303 409 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 GMPPBQ9Y5P6 360 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 HECTD1Q9ULT8 2610 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 LAP3P28838 519 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 PPA1Q15181 289 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 CXXC5Q7LFL8 322 aaKnown RBP25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 MUCL1Q96DR8 90 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 IL4I1Q96RQ9 567 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 VCX3BQ9H321 246 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 SIAEQ9HAT2 523 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 SLC25A15Q9Y619 301 aa25.9■■□□□ 1.74
LIMCH1-211ENST00000509638 CENPEQ02224 2701 aa25.89■■□□□ 1.74
LIMCH1-211ENST00000509638 BAHCC1Q9P281 2608 aa25.89■■□□□ 1.74
LIMCH1-211ENST00000509638 ARPC4-TTLL3A0A0A6YYG9 625 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNF503-AS2A6NEH8 195 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 TLX2O43763 284 aaPredicted RBP25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 GAAP10253 952 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 MSR1P21757 451 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 WFDC8Q8IUA0 241 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 SKA3Q8IX90 412 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 LRRC18Q8N456 261 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNF555Q8NEP9 628 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 BBS1Q8NFJ9 593 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 TMEM163Q8TC26 289 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNRF4Q8WWF5 429 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 CYGBQ8WWM9 190 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 PTP4A1Q93096 173 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 DACH2Q96NX9 599 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 OBP2BQ9NPH6 170 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 ZNF224Q9NZL3 707 aa25.89■■□□□ 1.73
LIMCH1-211ENST00000509638 LOC100130705A0A1B0GUX0 176 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms