RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, human

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX56-210	ENST00000479440	TNFAIP6	P98066	277 aa	Predicted RBP	13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	RGN	Q15493	299 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	OR1Q1	Q15612	314 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	OLFML2A	Q68BL7	652 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	LRFN4	Q6PJG9	635 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	KIR3DL3	Q8N743	410 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	MAL2	Q969L2	176 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	DCLRE1C	Q96SD1	692 aa	Known RBP	13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	EVA1A	Q9H8M9	152 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	CCNB1IP1	Q9NPC3	277 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	EGFL7	Q9UHF1	273 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	SLC13A4	Q9UKG4	626 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	LRCH1	Q9Y2L9	728 aa		13.56	□□□□□ -0.24
DDX56-210	ENST00000479440	PRORSD1P	A6NEY8	169 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440		F5H0A9	414 aa	Predicted RBP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	SDHD	O14521	159 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	HOXA3	O43365	443 aa	Predicted RBP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	PLAT	P00750	562 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	NUDT7	P0C024	238 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	BMP2	P12643	396 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	IDO1	P14902	403 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	TNFSF4	P23510	183 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	STOM	P27105	288 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	SEC61A1	P61619	476 aa	Known RBP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	BTG1	P62324	171 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	SRSF4	Q08170	494 aa	Known RBP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	THEM4	Q5T1C6	240 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	FAM205BP	Q63HN1	556 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	LRRN1	Q6UXK5	716 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	ZNF101	Q8IZC7	436 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	LRRC18	Q8N456	261 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	NOXO1	Q8NFA2	376 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	SLC25A40	Q8TBP6	338 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	KLF14	Q8TD94	323 aa	Predicted RBP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	MARS2	Q96GW9	593 aa	Known RBP	13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	NANOG	Q9H9S0	305 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	WNK2	Q9Y3S1	2297 aa		13.55	□□□□□ -0.24
DDX56-210	ENST00000479440	VWF	P04275	2813 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	IGHV3OR16-10	A0A075B7F0	116 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	FAM181B	A6NEQ2	426 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	NDUFA7	O95182	113 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	NGF	P01138	241 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	MMP7	P09237	267 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	TNFRSF1A	P19438	455 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	WNT5A	P41221	380 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	CDH12	P55289	794 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	PAX8	Q06710	450 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	PABPC1L2A	Q5JQF8	200 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	HDDC2	Q7Z4H3	204 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	ZER1	Q7Z7L7	766 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	COMTD1	Q86VU5	262 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	JAZF1	Q86VZ6	243 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	MUC20	Q8N307	709 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	ZNF283	Q8N7M2	679 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	NFKBID	Q8NI38	313 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	ZDHHC16	Q969W1	377 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	UPRT	Q96BW1	309 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	THOC1	Q96FV9	657 aa	Known RBP	13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	ROPN1B	Q9BZX4	212 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	OR2J1	Q9GZK6	312 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	ROPN1	Q9HAT0	212 aa	Predicted RBP	13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	SLCO1B3	Q9NPD5	702 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	DCAF16	Q9NXF7	216 aa		13.54	□□□□□ -0.24
DDX56-210	ENST00000479440	MDFIC2	A0A1B0GVS7	189 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	C5orf49	A4QMS7	147 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	SRRM5	B3KS81	715 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	CLIC1	O00299	241 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	TIMM8A	O60220	97 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	ALX3	O95076	343 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	EPHA3	P29320	983 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	GDI2	P50395	445 aa	Known RBP	13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	PDCD1	Q15116	288 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	MTX3	Q5HYI7	312 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	TMEM255A	Q5JRV8	349 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	GCNT6	Q5T4J0	391 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	RFPL4B	Q6ZWI9	263 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	LRRC28	Q86X40	367 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	MCHR2	Q969V1	340 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	POM121L2	Q96KW2	1035 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	ARHGDIG	Q99819	225 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	RBM4B	Q9BQ04	359 aa	Known RBP	13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	SSBP3	Q9BWW4	388 aa	Predicted RBP	13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	NANS	Q9NR45	359 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	PNPO	Q9NVS9	261 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	ZIM2	Q9NZV7	527 aa		13.53	□□□□□ -0.24
DDX56-210	ENST00000479440	CLPSL1	A2RUU4	121 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	TRPC5OS	A6NMA1	111 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	CENPBD1	B2RD01	187 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	MCIDAS	D6RGH6	385 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	CHP2	O43745	196 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	BGN	P21810	368 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	CPT2	P23786	658 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	CD80	P33681	288 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	MDH2	P40926	338 aa	Known RBP	13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	ARHGDIA	P52565	204 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	PPP1CB	P62140	327 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	STX3	Q13277	289 aa		13.52	□□□□□ -0.25
DDX56-210	ENST00000479440	TAF11	Q15544	211 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms