RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SARAFQ96BY9 339 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 ISOC1Q96CN7 298 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 YIPF3Q9GZM5 350 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 ZNF593O00488 134 aaPredicted RBP16.47■□□□□ 0.23
CLN3-206ENST00000360019 OR12D2P58182 307 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 ADAM8P78325 824 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 CDONQ4KMG0 1287 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 TMPRSS11AQ6ZMR5 421 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 SLC16A12Q6ZSM3 486 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 FGD2Q7Z6J4 655 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 TUSC5Q8IXB3 177 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 TMEM45BQ96B21 275 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 C4orf36Q96KX1 117 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 BCO1Q9HAY6 547 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 RSL24D1Q9UHA3 163 aaKnown RBP16.47■□□□□ 0.23
CLN3-206ENST00000360019 KCNG2Q9UJ96 466 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 CLEC4AQ9UMR7 237 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 ITPR1Q14643 2758 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 SLC22A20A6NK97 555 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 GPR171O14626 319 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 NR2C1P13056 603 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 CDAP32320 146 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 GTF2A1P52655 376 aaPredicted RBP16.47■□□□□ 0.23
CLN3-206ENST00000360019 ANKRD13BQ86YJ7 626 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 KLBQ86Z14 1044 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 OTOSQ8NHW6 89 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 INTS12Q96CB8 462 aaKnown RBP16.47■□□□□ 0.23
CLN3-206ENST00000360019 GPR137Q96N19 417 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 ENPP5Q9UJA9 477 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 TUBD1Q9UJT1 453 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 ZNF175Q9Y473 711 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 UGT2A1Q9Y4X1 527 aa16.47■□□□□ 0.23
CLN3-206ENST00000360019 A0A1W2PPL8 197 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ZNF670-ZNF695F2Z2N8 137 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 CCRL2O00421 344 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 SLC43A1O75387 559 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 HRGP04196 525 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 SPARCP09486 303 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ALOX5APP20292 161 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 NR4A1P22736 598 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 EDNRAP25101 427 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 LAP3P28838 519 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ENTPD1P49961 510 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ACSM1Q08AH1 577 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 RNPS1Q15287 305 aaKnown RBP16.46■□□□□ 0.23
CLN3-206ENST00000360019 TP53I3Q53FA7 332 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 C10orf128Q5T292 105 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.46■□□□□ 0.23
CLN3-206ENST00000360019 P2RY8Q86VZ1 359 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ATCAYQ86WG3 371 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 OR5M9Q8NGP3 310 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ZNF420Q8TAQ5 688 aaPredicted RBP16.46■□□□□ 0.23
CLN3-206ENST00000360019 C11orf40Q8WZ69 217 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 AMELYQ99218 206 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 MNTQ99583 582 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 DOK1Q99704 481 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 RNF122Q9H9V4 155 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 ISYNA1Q9NPH2 558 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 EMC3Q9P0I2 261 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 LAMP5Q9UJQ1 280 aa16.46■□□□□ 0.23
CLN3-206ENST00000360019 NOSIPQ9Y314 301 aaKnown RBP16.46■□□□□ 0.23
CLN3-206ENST00000360019 OR14I1A6ND48 311 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ZNF724A8MTY0 619 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 J3QLW9 94 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 UPK3AO75631 287 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 MT-ND5P03915 603 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 CPEP16870 476 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ZNF19P17023 458 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 TMBIM6P55061 237 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ACTA2P62736 377 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ACTG2P63267 376 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 PCK2Q16822 640 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ZNF684Q5T5D7 378 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 LIPKQ5VXJ0 399 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ZNF324BQ6AW86 544 aaPredicted RBP16.45■□□□□ 0.22
CLN3-206ENST00000360019 C19orf48Q6RUI8 117 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 FAM180AQ6UWF9 173 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 SYS1Q8N2H4 156 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ZFP41Q8N8Y5 198 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 SNX33Q8WV41 574 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 HTRA1Q92743 480 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 C12orf43Q96C57 262 aaKnown RBP16.45■□□□□ 0.22
CLN3-206ENST00000360019 ULBP2Q9BZM5 246 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 BABAM2Q9NXR7 383 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 CLCF1Q9UBD9 225 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 PHF3Q92576 2039 aaKnown RBP16.45■□□□□ 0.22
CLN3-206ENST00000360019 CACNA1CQ13936 2221 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 E9PI62 339 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 H3BMQ9 156 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 PSMD9O00233 223 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 GABARAPO95166 117 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 VASH1Q7L8A9 365 aaPredicted RBP16.45■□□□□ 0.22
CLN3-206ENST00000360019 PHC2Q8IXK0 858 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 ZNF837Q96EG3 531 aaPredicted RBP16.45■□□□□ 0.22
CLN3-206ENST00000360019 SEC61A2Q9H9S3 476 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 CALHM2Q9HA72 323 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 TMEM14AQ9Y6G1 99 aa16.45■□□□□ 0.22
CLN3-206ENST00000360019 NBEAQ8NFP9 2946 aa16.44■□□□□ 0.22
CLN3-206ENST00000360019 PNMA8CA0A1B0GUJ8 204 aa16.44■□□□□ 0.22
CLN3-206ENST00000360019 ZNF701M0R085 212 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms