RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SNX18Q96RF0 628 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 TEX12Q9BXU0 123 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 HDHD5Q9BXW7 423 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 TOR3AQ9H497 397 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 C8orf4Q9NR00 106 aa26.01■■□□□ 1.75
LIMCH1-211ENST00000509638 SNAP29O95721 258 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 CTLA4P16410 223 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 CRMP1Q14194 572 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 ZNF362Q5T0B9 420 aaPredicted RBP26■■□□□ 1.75
LIMCH1-211ENST00000509638 PACRGLQ8N7B6 248 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 SLC37A3Q8NCC5 494 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 STEAP2Q8NFT2 490 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 OR1K1Q8NGR3 316 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 MBOAT4Q96T53 435 aa26■■□□□ 1.75
LIMCH1-211ENST00000509638 RPRD1BQ9NQG5 326 aaKnown RBP26■■□□□ 1.75
LIMCH1-211ENST00000509638 OR6C68A6NDL8 312 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 SURF4O15260 269 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 B4GALT1P15291 398 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 ZNF84P51523 738 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 DBPQ10586 325 aaPredicted RBP25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 STK11Q15831 433 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 GABRA6Q16445 453 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 SLX4IPQ5VYV7 408 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 SLC25A47Q6Q0C1 308 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 TSSK2Q96PF2 358 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 FOXB1Q99853 325 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 RERGLQ9H628 205 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 SMPD3Q9NY59 655 aaPredicted RBP25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 SLC16A7O60669 478 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 HMGN1P05114 100 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 OR7E24Q6IFN5 339 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 NRG4Q8WWG1 115 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 SLC38A2Q96QD8 506 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 PRRG3Q9BZD7 231 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 NUAK2Q9H093 628 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 UGT2A1Q9Y4X1 527 aa25.99■■□□□ 1.75
LIMCH1-211ENST00000509638 A0A096LPE4 126 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 A0A1W2PPZ6 126 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 IGFBP2P18065 325 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 HIKESHIQ53FT3 197 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 ANKRD16Q6P6B7 361 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 HTRA1Q92743 480 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 PLEKHA8Q96JA3 519 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 PSMG3-AS1Q96PY0 264 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 GRIP2Q9C0E4 1043 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 NELFAQ9H3P2 528 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 TVP23BQ9NYZ1 205 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 PRR14LQ5THK1 2151 aa25.98■■□□□ 1.75
LIMCH1-211ENST00000509638 M0R129 80 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 DCTN6O00399 190 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 ETFDHQ16134 617 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 C12orf73Q69YU5 71 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 DNM1P34Q6PK57 102 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 KLHL24Q6TFL4 600 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 ZNF813Q6ZN06 617 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 RDH12Q96NR8 316 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 TMEM38BQ9NVV0 291 aa25.97■■□□□ 1.75
LIMCH1-211ENST00000509638 A0A1W2PPL8 197 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 OR5H1A6NKK0 313 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 CRABP1P29762 137 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 HOXC12P31275 282 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 CDAP32320 146 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 SNAPC1Q16533 368 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 TBRG1Q3YBR2 411 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 ZNF627Q7L945 461 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 C17orf78Q8N4C9 275 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 OR9Q1Q8NGQ5 310 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 MUS81Q96NY9 551 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 DDOQ99489 341 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 MED18Q9BUE0 208 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 OR10A4Q9H209 315 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 VCXQ9H320 206 aa25.96■■□□□ 1.75
LIMCH1-211ENST00000509638 TUBAL3A6NHL2 446 aa25.95■■□□□ 1.75
LIMCH1-211ENST00000509638 FAM183AA6NL82 134 aa25.95■■□□□ 1.75
LIMCH1-211ENST00000509638 DLGAP1O14490 977 aa25.95■■□□□ 1.75
LIMCH1-211ENST00000509638 OR6V1Q8N148 313 aa25.95■■□□□ 1.75
LIMCH1-211ENST00000509638 BCL2L2Q92843 193 aaPredicted RBP25.95■■□□□ 1.75
LIMCH1-211ENST00000509638 FOXN4Q96NZ1 517 aa25.95■■□□□ 1.75
LIMCH1-211ENST00000509638 CRYBG3Q68DQ2 2970 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 IGLV1-36A0A0B4J1U3 117 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 KHDRBS3O75525 346 aaKnown RBP25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 PPP3CBP16298 524 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 PAICSP22234 425 aaKnown RBP25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 PEX19P40855 299 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 LINC01560Q8TB33 94 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 OTULINQ96BN8 352 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 RACGAP1Q9H0H5 632 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 MED20Q9H944 212 aa25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 SRA1Q9HD15 236 aaKnown RBP25.95■■□□□ 1.74
LIMCH1-211ENST00000509638 PKDREJQ9NTG1 2253 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 SH3D21A4FU49 640 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 TIMM23BQ5SRD1 257 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 MEX3BQ6ZN04 569 aaKnown RBP25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 C22orf34Q6ZV56 151 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 DMRTC2Q8IXT2 367 aaPredicted RBP25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 OR52N5Q8NH56 324 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 ZC3HAV1LQ96H79 300 aaKnown RBP25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 WFIKKN1Q96NZ8 548 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 HCAR1Q9BXC0 346 aa25.94■■□□□ 1.74
LIMCH1-211ENST00000509638 NMNAT2Q9BZQ4 307 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms