RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CACNA1DQ01668 2161 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 A0A087WV62 115 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 LINC00862A6NCI5 91 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 GPR171O14626 319 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 MAGEB4O15481 346 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 IGF2P01344 180 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 SNRPBP14678 240 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 WT1P19544 449 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PAICSP22234 425 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 CLDN20P56880 219 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PPP3R1P63098 170 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 KCNJ10P78508 379 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 DGCR2P98153 550 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ST3GAL2Q16842 350 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 DCST1Q5T197 706 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 CBLN3Q6UW01 205 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF836Q6ZNA1 936 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ATCAYQ86WG3 371 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 GPR32P1Q8NGA4 272 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 OR4D10Q8NGI6 311 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 OR5L2Q8NGL0 311 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 C9orf43Q8TAL5 461 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 CTHRC1Q96CG8 243 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 RHOVQ96L33 236 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PINK1Q9BXM7 581 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 EVA1AQ9H8M9 152 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 MTHFD2LQ9H903 347 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ALKBH4Q9NXW9 302 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 MED11Q9P086 117 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 TNFRSF10DQ9UBN6 386 aa7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF443Q9Y2A4 671 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-209ENST00000509277 PSMD9O00233 223 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC43A1O75387 559 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 AGR2O95994 175 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SCG5P05408 212 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TRAPPC2P0DI81 140 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TRAPPC2BP0DI82 140 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SPP1P10451 314 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 COX6A1P12074 109 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 HOXB9P17482 250 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SHC1P29353 583 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 CRYBB2P43320 205 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 PPICP45877 212 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 PSMD4P55036 377 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 OR2B8PP59922 312 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 VEZF1Q14119 521 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 PCOLCEQ15113 449 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 HFEQ30201 348 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 CLLU1Q5K131 121 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 GLT8D1Q68CQ7 371 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 CBLL1Q75N03 491 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 FAM219AQ8IW50 185 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SPAG16Q8N0X2 631 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TEX19Q8NA77 164 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 OR4D11Q8NGI4 311 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SECISBP2Q96T21 854 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 G6PC3Q9BUM1 346 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 NKX6-2Q9C056 277 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 A4GALTQ9NPC4 353 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 OR2S2Q9NQN1 319 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 DUSP22Q9NRW4 184 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 MYOTQ9UBF9 498 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 PLEKHB1Q9UF11 243 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 RPL36Q9Y3U8 105 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 IGHV1-45A0A0A0MS14 117 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 BLACEA4D250 179 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 VSTM2BA6NLU5 285 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 OIP5O43482 229 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TFPIP10646 304 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF14P17017 642 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 C4BPBP20851 252 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TRHRP34981 398 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 CRYBA2P53672 197 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SSPNQ14714 243 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 C4orf46Q504U0 113 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF468Q5VIY5 522 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ZFYVE26Q68DK2 2539 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SPINK14Q6IE38 97 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 MORN4Q8NDC4 146 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 OR52E4Q8NGH9 312 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SNIP1Q8TAD8 396 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 GEMIN6Q8WXD5 167 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TTC9Q92623 222 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 NKX3-1Q99801 234 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 C20orf24Q9BUV8 137 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 TMEM38AQ9H6F2 299 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ZFP64Q9NPA5 681 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 KCNE5Q9UJ90 142 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ZNF223Q9UK11 482 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ZC3H12DA2A288 527 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ANKRD61A6NGH8 418 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 KCNAB3O43448 404 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 DNASE1L1P49184 302 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 CD226Q15762 336 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 OCLNQ16625 522 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ARHGAP11BQ3KRB8 267 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 GXYLT1Q4G148 440 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 MDGA2Q7Z553 956 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 ADGRG3Q86Y34 549 aa7.86□□□□□ -1.15
LIMCH1-209ENST00000509277 SLC25A36Q96CQ1 311 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms