RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MCHR2Q969V1 340 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 NMD3Q96D46 503 aaKnown RBP10.35□□□□□ -0.75
VPS52-213ENST00000461743 ZNF837Q96EG3 531 aaPredicted RBP10.35□□□□□ -0.75
VPS52-213ENST00000461743 TNFRSF13CQ96RJ3 184 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 CCL19Q99731 98 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 KCNS3Q9BQ31 491 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 CXXC4Q9H2H0 198 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 RNPEPL1Q9HAU8 725 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 NRIP3Q9NQ35 241 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 CCM2LQ9NUG4 571 aaPredicted RBP10.35□□□□□ -0.75
VPS52-213ENST00000461743 GRHPRQ9UBQ7 328 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 SLC7A8Q9UHI5 535 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 PLEKHA6Q9Y2H5 1048 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 LRRC42Q9Y546 428 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 FLNAP21333 2647 aaKnown RBP10.35□□□□□ -0.75
VPS52-213ENST00000461743 A0A096LPE4 126 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 A0A1W2PPZ6 126 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 A0A1W2PR80 420 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 IMPA2O14732 288 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 CCNB2O95067 398 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 TXNDC12O95881 172 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 OR8G3PP0DMU2 310 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 CBR1P16152 277 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 CD53P19397 219 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 SLC6A6P31641 620 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 IST1P53990 364 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 MRPS34P82930 218 aaKnown RBP10.34□□□□□ -0.75
VPS52-213ENST00000461743 RUNX1T1Q06455 604 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 KRR1Q13601 381 aaKnown RBP10.34□□□□□ -0.75
VPS52-213ENST00000461743 GSG1Q2KHT4 349 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 ZNF770Q6IQ21 691 aaPredicted RBP10.34□□□□□ -0.75
VPS52-213ENST00000461743 LRFN4Q6PJG9 635 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 ZNF620Q6ZNG0 422 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 SPATA24Q86W54 205 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 LRRC75A-AS1Q8N1F1 130 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 SLC22A24Q8N4F4 322 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 CLDN22Q8N7P3 220 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 PAPD5Q8NDF8 572 aaKnown RBP10.34□□□□□ -0.75
VPS52-213ENST00000461743 IL17RDQ8NFM7 739 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 CANT1Q8WVQ1 401 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 IGFBPL1Q8WX77 278 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 AKAP1Q92667 903 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS52-213ENST00000461743 NRGNQ92686 78 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 RBP7Q96R05 134 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 SNX18Q96RF0 628 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 TSC22D3Q99576 134 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 CHID1Q9BWS9 393 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 DGCR6LQ9BY27 220 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 GRIP2Q9C0E4 1043 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 YIPF3Q9GZM5 350 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 C1orf198Q9H425 327 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 B3GNT2Q9NY97 397 aa10.34□□□□□ -0.75
VPS52-213ENST00000461743 ZNF346Q9UL40 294 aaKnown RBP10.34□□□□□ -0.75
VPS52-213ENST00000461743 SAMHD1Q9Y3Z3 626 aaKnown RBP10.34□□□□□ -0.75
VPS52-213ENST00000461743 MED13LQ71F56 2210 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 IGHV1-18A0A0C4DH31 117 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 ARPC3O15145 178 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 IDH3BO43837 385 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 SEC14L2O76054 403 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 RAB36O95755 333 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 PLAUP00749 431 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 CST1P01037 141 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 CRYAAP02489 173 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 PAX1P15863 534 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 ZNF26P17031 533 aaPredicted RBP10.33□□□□□ -0.76
VPS52-213ENST00000461743 GSTM3P21266 225 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 CAPZA2P47755 286 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 FXYD6P3P58550 94 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 ERVK-25P63136 954 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 TESK1Q15569 626 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 MICAQ29983 383 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 DEFB113Q30KQ7 82 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 SLC36A2Q495M3 483 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 MESTQ5EB52 335 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 ZNF544Q6NX49 715 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 SLC25A47Q6Q0C1 308 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 SLC22A25Q6T423 547 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 SPNS3Q6ZMD2 512 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 FOXL2NBQ6ZUU3 175 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 DTX2Q86UW9 622 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 MDP1Q86V88 176 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 IGFN1Q86VF2 1251 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 MEX3DQ86XN8 651 aaKnown RBP10.33□□□□□ -0.76
VPS52-213ENST00000461743 SYT14Q8NB59 555 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 OR4F15Q8NGB8 312 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 OR52L1Q8NGH7 329 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 LILRB1Q8NHL6 650 aaPredicted RBP10.33□□□□□ -0.76
VPS52-213ENST00000461743 WACQ9BTA9 647 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 OR52D1Q9H346 318 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 LIME1Q9H400 295 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 ZNF224Q9NZL3 707 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 VSX1Q9NZR4 365 aaPredicted RBP10.33□□□□□ -0.76
VPS52-213ENST00000461743 ADAM18Q9Y3Q7 739 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 CDH10Q9Y6N8 788 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 ZNF469Q96JG9 3925 aaPredicted RBP10.33□□□□□ -0.76
VPS52-213ENST00000461743 USF3Q68DE3 2245 aa10.33□□□□□ -0.76
VPS52-213ENST00000461743 F8P00451 2351 aa10.32□□□□□ -0.76
VPS52-213ENST00000461743 PRSS37A4D1T9 235 aa10.32□□□□□ -0.76
VPS52-213ENST00000461743 FKBP6O75344 327 aa10.32□□□□□ -0.76
VPS52-213ENST00000461743 CIB2O75838 187 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms