RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RBP7Q96R05 134 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 MGLLQ99685 303 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 ALG8Q9BVK2 526 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 PRDM14Q9GZV8 571 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 WDR76Q9H967 626 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 MARCH7Q9H992 704 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 MCTS1Q9ULC4 181 aaKnown RBP16.52■□□□□ 0.24
CLN3-206ENST00000360019 COPS3Q9UNS2 423 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 CAMK2AQ9UQM7 478 aa16.52■□□□□ 0.24
CLN3-206ENST00000360019 DAPL1A0PJW8 107 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 AQP8O94778 261 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 SYNGR4O95473 234 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 OR2T7P0C7T2 308 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 HSMCR30P0CW71 290 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 PSKH1P11801 424 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 PTGS2P35354 604 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 LIPAP38571 399 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 CENPAP49450 140 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 WNT4P56705 351 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 GALEQ14376 348 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 INAQ16352 499 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 GPR107Q5VW38 600 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 DNM1P34Q6PK57 102 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 SLC16A9Q7RTY1 509 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 OR2T27Q8NH04 317 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 GATAD2BQ8WXI9 593 aa16.52■□□□□ 0.23
CLN3-206ENST00000360019 MRPL22Q9NWU5 206 aaKnown RBP16.52■□□□□ 0.23
CLN3-206ENST00000360019 TGFBR2P37173 567 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 GLO1Q04760 184 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 KLHL36Q8N4N3 616 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 OR52N1Q8NH53 320 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 NSMAFQ92636 917 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 MCHR2Q969V1 340 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 OPALINQ96PE5 141 aa16.51■□□□□ 0.23
CLN3-206ENST00000360019 NAA50Q9GZZ1 169 aaKnown RBP16.51■□□□□ 0.23
CLN3-206ENST00000360019 ISG20L2Q9H9L3 353 aaKnown RBP16.51■□□□□ 0.23
CLN3-206ENST00000360019 IGKV3D-15A0A087WSY6 115 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 CENPBD1B2RD01 187 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 KHDRBS3O75525 346 aaKnown RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 MPZL1O95297 269 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 HLA-DQA2P01906 255 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 HOXD11P31277 338 aaPredicted RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 RPS27P42677 84 aaKnown RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 ARMCX4Q5H9R4 360 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 PHYHD1Q5SRE7 291 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 LRFN4Q6PJG9 635 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 SLC25A47Q6Q0C1 308 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 ZNF322Q6U7Q0 402 aaPredicted RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 SPRYD4Q8WW59 207 aaPredicted RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 TMEM54Q969K7 222 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 YIPF6Q96EC8 236 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 INTS14Q96SY0 518 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 FUNDC2Q9BWH2 189 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 TTTY10Q9BZA0 68 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 GLTPQ9NZD2 209 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 FOXD3Q9UJU5 478 aaPredicted RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 RCE1Q9Y256 329 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 KLHDC2Q9Y2U9 406 aa16.5■□□□□ 0.23
CLN3-206ENST00000360019 CAB39Q9Y376 341 aaPredicted RBP16.5■□□□□ 0.23
CLN3-206ENST00000360019 A0A1B0GTH9 108 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 CCDC160A6NGH7 325 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 LALBAP00709 142 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 QDPRP09417 244 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 GAAP10253 952 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 CSNK1A1P48729 337 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 BLVRAP53004 296 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 MEP1BQ16820 701 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 CHMP1BQ7LBR1 199 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 CDC20BQ86Y33 519 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 Q8NA96 180 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 SLC26A10Q8NG04 563 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 OR6N2Q8NGY6 317 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 FNDC8Q8TC99 324 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 PNPLA2Q96AD5 504 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 ARHGAP9Q9BRR9 750 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 KLHL9Q9P2J3 617 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 SVILO95425 2214 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 SCG5P05408 212 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 MLLT11Q13015 90 aaPredicted RBP16.49■□□□□ 0.23
CLN3-206ENST00000360019 DPY19L4Q7Z388 723 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.49■□□□□ 0.23
CLN3-206ENST00000360019 OR6N1Q8NGY5 312 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 DGCR14Q96DF8 476 aaKnown RBP16.49■□□□□ 0.23
CLN3-206ENST00000360019 PRRG4Q9BZD6 226 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 ZMIZ1Q9ULJ6 1067 aa16.49■□□□□ 0.23
CLN3-206ENST00000360019 PRR32B1ATL7 298 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 MAGEB4O15481 346 aaPredicted RBP16.48■□□□□ 0.23
CLN3-206ENST00000360019 AKAP8O43823 692 aaKnown RBP16.48■□□□□ 0.23
CLN3-206ENST00000360019 TGM6O95932 706 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 CRYABP02511 175 aaKnown RBP16.48■□□□□ 0.23
CLN3-206ENST00000360019 CD36P16671 472 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 RGS6P49758 472 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 ZNF133P52736 654 aaPredicted RBP16.48■□□□□ 0.23
CLN3-206ENST00000360019 HSF2Q03933 536 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 SSX1Q16384 188 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 TSTQ16762 297 aaKnown RBP16.48■□□□□ 0.23
CLN3-206ENST00000360019 AAED1Q7RTV5 226 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 ADGRE4PQ86SQ3 457 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 GLB1L2Q8IW92 636 aa16.48■□□□□ 0.23
CLN3-206ENST00000360019 C20orf196Q8IYI0 205 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms