RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RPL18Q07020 188 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 GGTLC2Q14390 218 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 CARTPTQ16568 116 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 HIST3H3Q16695 136 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 CYBRD1Q53TN4 286 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 DEF8Q6ZN54 512 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 NKAIN4Q8IVV8 208 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 SKA3Q8IX90 412 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 RP9Q8TA86 221 aaKnown RBP16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 LZICQ8WZA0 190 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 MS4A3Q96HJ5 214 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 MS4A5Q9H3V2 200 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 C1orf198Q9H425 327 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 TMEM38BQ9NVV0 291 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 MED31Q9Y3C7 131 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 MXRA5Q9NR99 2828 aa16.46■□□□□ 0.23
CCDC28A-203ENST00000617445 SLC22A23A1A5C7 686 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 ELOVL7A1L3X0 281 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 NPIPB13A6NJU9 1138 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 NPIPB4C9JG80 1138 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 MCIDASD6RGH6 385 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 SYNGR3O43761 229 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 PTHP01270 115 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 QDPRP09417 244 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 TSPAN19P0C672 248 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 DAOP14920 347 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF84P51523 738 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 CLRN1P58418 232 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 ST3GAL3Q11203 375 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 PIN1Q13526 163 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 IQCCQ4KMZ1 466 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 GKAP1Q5VSY0 366 aaPredicted RBP16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 TMEM53Q6P2H8 277 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 MICU2Q8IYU8 434 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF786Q8N393 782 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 TMEM255BQ8WV15 326 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 SEPHS2Q99611 448 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 MDFIQ99750 246 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 MRPL13Q9BYD1 178 aaKnown RBP16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 INIPQ9NRY2 104 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 SLC7A8Q9UHI5 535 aa16.45■□□□□ 0.22
CCDC28A-203ENST00000617445 STAMBPO95630 424 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 FAM157CP0CG43 387 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 NR2C1P13056 603 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 APEHP13798 732 aaKnown RBP16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF23P17027 643 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 OR1E2P47887 323 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 UGT2B15P54855 530 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 GUCY1A3Q02108 690 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 MELKQ14680 651 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 RAB39AQ14964 217 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 TAF11Q15544 211 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 FXNQ16595 210 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 SLC36A2Q495M3 483 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 UBASH3BQ8TF42 649 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 MCHR2Q969V1 340 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 BEX2Q9BXY8 128 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 MED4Q9NPJ6 270 aa16.44■□□□□ 0.22
CCDC28A-203ENST00000617445 SH3PXD2BA1X283 911 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 M0R233 179 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 ATP8B1O43520 1251 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 LMX1BO60663 402 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 CCDC22O60826 627 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 F13BP05160 661 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 ADRA2AP08913 450 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 ACADSP16219 412 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 TNFRSF1BP20333 461 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF133P52736 654 aaPredicted RBP16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 LRRC23Q53EV4 343 aaPredicted RBP16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 FAM166AQ6J272 317 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 CXXC5Q7LFL8 322 aaKnown RBP16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 CDK20Q8IZL9 346 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 NOXO1Q8NFA2 376 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 OR4K5Q8NGD3 323 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 OR1J2Q8NGS2 313 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 PFN4Q8NHR9 129 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 SPATA3Q8NHX4 192 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 ASB10Q8WXI3 467 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 TPD52L3Q96J77 140 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 PRRC1Q96M27 445 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 HOPXQ9BPY8 73 aaPredicted RBP16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 MRPL37Q9BZE1 423 aaKnown RBP16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 LRMDAQ9H2I8 198 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 RNF121Q9H920 327 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 SMURF2Q9HAU4 748 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 C20orf141Q9NUB4 165 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 REV1Q9UBZ9 1251 aa16.43■□□□□ 0.22
CCDC28A-203ENST00000617445 ANK3Q12955 4377 aaKnown RBP16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 GMNCA6NCL1 334 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 NDUFAB1O14561 156 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 SHOX2O60902 331 aaPredicted RBP16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 AQP2P41181 271 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 SELENOVP59797 346 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 PLP2Q04941 152 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 SF3A3Q12874 501 aaKnown RBP eCLIP16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 ANKDD1AQ495B1 522 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 C10orf128Q5T292 105 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 UGT2A3Q6UWM9 527 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 SLC16A14Q7RTX9 510 aa16.42■□□□□ 0.22
CCDC28A-203ENST00000617445 ZNF584Q8IVC4 421 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms