RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TRAV6A0A075B6T7 132 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CREBL2O60519 120 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TRAPPC6AO75865 159 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TAS2R38P59533 333 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TAS2R20P59543 309 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GPR85P60893 370 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GMFBP60983 142 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CSNK1G2P78368 415 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 RNPS1Q15287 305 aaKnown RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 KANSL1Q7Z3B3 1105 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 CENPVQ7Z7K6 275 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DND1Q8IYX4 353 aaKnown RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZDHHC22Q8N966 263 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ADAMTS17Q8TE56 1095 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZFP3Q96NJ6 502 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ELF4Q99607 663 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 HPF1Q9NWY4 346 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DAPL1A0PJW8 107 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SULT2B1O00204 365 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 FLRT2O43155 660 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF217O75362 1048 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 BPNT1O95861 308 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SOD2P04179 222 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF823P16415 610 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ALOX5APP20292 161 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TNFRSF1BP20333 461 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GRK6P43250 576 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ID2Q02363 134 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SLBPQ14493 270 aaKnown RBP eCLIP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 HABP2Q14520 560 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TMUB2Q71RG4 321 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ERN2Q76MJ5 926 aaKnown RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 C15orf54Q8N8G6 183 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 SAMD12Q8N8I0 201 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 OR13C3Q8NGS6 347 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 LMX1AQ8TE12 382 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DOK4Q8TEW6 326 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 GHSRQ92847 366 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 KXD1Q9BQD3 176 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 ALG8Q9BVK2 526 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 DPCDQ9BVM2 203 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 RIOK2Q9BVS4 552 aaKnown RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 BCO1Q9HAY6 547 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 PLCL2Q9UPR0 1127 aa4.87□□□□□ -1.63
SYNE1-220ENST00000471834 TIMM8BQ9Y5J9 83 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-220ENST00000471834 NUP210Q8TEM1 1887 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GLOD5A6NK44 160 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 K7ERQ8 282 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 RAB27BO00194 218 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 RCBTB2O95199 551 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ACTL6AO96019 429 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 F3P13726 295 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 S1PR1P21453 382 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 HIST1H1TP22492 207 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GRPRP30550 384 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 VSX2P58304 361 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 MEF2AQ02078 507 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C2orf68Q2NKX9 166 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF791Q3KP31 576 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 CBLN3Q6UW01 205 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SFT2D1Q8WV19 159 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SPRYD4Q8WW59 207 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GATAD2BQ8WXI9 593 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GCDHQ92947 438 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ELMOD3Q96FG2 381 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 RCC1LQ96I51 464 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TSNAXQ99598 290 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SYT3Q9BQG1 590 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 APMAPQ9HDC9 416 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 MRPL15Q9P015 296 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 RCC2Q9P258 522 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GHRLQ9UBU3 117 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C19orf25Q9UFG5 118 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 CLEC4EQ9ULY5 219 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 PLXNB3Q9ULL4 1909 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF638Q14966 1978 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 EVPLQ92817 2033 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 EMC8O43402 210 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZFPL1O95159 310 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 IL33O95760 270 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 HCCSP53701 268 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ACSM3Q53FZ2 586 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 EIPR1Q53HC9 387 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 DCXRQ7Z4W1 244 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 HSD11B1LQ7Z5J1 315 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 BCDIN3DQ7Z5W3 292 aaKnown RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GLB1L2Q8IW92 636 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 NUBPLQ8TB37 319 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 PRR7Q8TB68 274 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 SORCS1Q8WY21 1168 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 ZNF845Q96IR2 970 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C4orf45Q96LM5 186 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 PBX4Q9BYU1 374 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 MTHFD2LQ9H903 347 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 KCNG2Q9UJ96 466 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 MOKQ9UQ07 419 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 GPR55Q9Y2T6 319 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-220ENST00000471834 C2orf92A0A1B0GVN3 265 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 A0A1W2PPK0 400 aa4.86□□□□□ -1.63
SYNE1-220ENST00000471834 TMEM202A6NGA9 273 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms