RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 A0A1B0GW55 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4L2P0CJ85 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4L3P0CJ86 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4L4P0CJ87 422 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4L5P0CJ88 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4L6P0CJ89 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4L7P0CJ90 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 TRAPPC2P0DI81 140 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 TRAPPC2BP0DI82 140 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 EN2P19622 333 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 GNALP38405 381 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 H2BFSP57053 126 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 EIF2B1Q14232 305 aaKnown RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 ZNF776Q68DI1 518 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 FAM220AQ7Z4H9 259 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 OR2L13Q8N349 312 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 OR4C16Q8NGL9 310 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ADAMTS14Q8WXS8 1223 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 KIAA1143Q96AT1 154 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 SMIM19Q96E16 107 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 C12orf57Q99622 126 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DHRS9Q9BPW9 319 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 TINAGL1Q9GZM7 467 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 ZNF350Q9GZX5 532 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 NRIP3Q9NQ35 241 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ANKRD10Q9NXR5 420 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 MBD2Q9UBB5 411 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 DUX4Q9UBX2 424 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SLC22A7Q9Y694 548 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 PLXNA2O75051 1894 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 LOC101059948A0A1B0GTJ6 334 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 MED19A0JLT2 244 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 ZNF879B4DU55 563 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ALOX12BO75342 701 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 GRK6P43250 576 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 TAS2R20P59543 309 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ZP2Q05996 745 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 EXOSC6Q5RKV6 272 aaKnown RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 FAM199XQ6PEV8 388 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 NPSR1Q6W5P4 371 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 STAC2Q6ZMT1 411 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 MED25Q71SY5 747 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ZFP82Q8N141 532 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 MUC20Q8N307 709 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 GVQW1Q8N7I0 195 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 CDRT4Q8N9R6 151 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 C16orf52Q8NHV5 167 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SFXN5Q8TD22 340 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ZNF775Q96BV0 537 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 RADILQ96JH8 1075 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 BMFQ96LC9 184 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 SLC6A7Q99884 636 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 EMC6Q9BV81 110 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 ADAM29Q9UKF5 820 aa7.88□□□□□ -1.15
USP40-203ENST00000427112 C19orf53Q9UNZ5 99 aaPredicted RBP7.88□□□□□ -1.15
USP40-203ENST00000427112 TMEM235A6NFC5 223 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 SLC33A1O00400 549 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 RLN2P04090 185 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 HSD17B2P37059 387 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 GFERP55789 205 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 RPS15AP62244 130 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 ILF3Q12906 894 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP40-203ENST00000427112 KLF9Q13886 244 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 PRICKLE4Q2TBC4 344 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ITPRIPL2Q3MIP1 535 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ALG10Q5BKT4 473 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ZNF425Q6IV72 752 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TMEM81Q6P7N7 255 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ABHD13Q7L211 337 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ANGPTL6Q8NI99 470 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 BRIX1Q8TDN6 353 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 C2CD4CQ8TF44 421 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ST8SIA4Q92187 359 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 OR2M2Q96R28 347 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ZNF768Q9H5H4 540 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 OR2S2Q9NQN1 319 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 DNAJB12Q9NXW2 375 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 FRRS1LQ9P0K9 344 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 CPNE7Q9UBL6 633 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 GPR160Q9UJ42 338 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 MRTO4Q9UKD2 239 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 H3BML4 177 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 CREBL2O60519 120 aaPredicted RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 SLC16A7O60669 478 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 THEGLP0DJG4 465 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 CALCBP10092 127 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ERGP11308 486 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 AKR1C4P17516 323 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ITGA3P26006 1051 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ACAA2P42765 397 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 POU3F4P49335 361 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ART1P52961 327 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 CEBPGP53567 150 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TAGLNQ01995 201 aaKnown RBP7.87□□□□□ -1.15
USP40-203ENST00000427112 FMODQ06828 376 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 ALG11Q2TAA5 492 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 CDONQ4KMG0 1287 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TMEM240Q5SV17 173 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 TMEM200AQ86VY9 491 aa7.87□□□□□ -1.15
USP40-203ENST00000427112 OOSP2Q86WS3 158 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms