RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 FOXJ2Q9P0K8 574 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 CLN8Q9UBY8 286 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 RIMS3Q9UJD0 308 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 RPH3ALQ9UNE2 315 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 ITGB4P16144 1822 aa8.4□□□□□ -1.06
LIMCH1-202ENST00000381753 M0R3H8 397 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 ACP1P24666 158 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 BLVRBP30043 206 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 CD68P34810 354 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 CORO7P57737 925 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 RAB1AP62820 205 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 NKX6-1P78426 367 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 KCTD21Q4G0X4 260 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 DPPA2Q7Z7J5 298 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 EGFL6Q8IUX8 553 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 LILRB2Q8N423 598 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 HDAC2Q92769 488 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 RIMS4Q9H426 269 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 ASF1BQ9NVP2 202 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 SCN7AQ01118 1682 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 OR2AT4A6NND4 320 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 PRR35P0CG20 571 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 B4GALT1P15291 398 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 STOMP27105 288 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 MAGEA12P43365 314 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 ASCL1P50553 236 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 PLBD1Q6P4A8 553 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 PGAM4Q8N0Y7 254 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 METTL4Q8N3J2 472 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 OR2M7Q8NG81 312 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 CSF3RQ99062 836 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 TMEM246Q9BRR3 403 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 MS4A8Q9BY19 250 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 ZDHHC2Q9UIJ5 367 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 RNF150Q9ULK6 438 aa8.4□□□□□ -1.07
LIMCH1-202ENST00000381753 BHLHE40O14503 412 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 HS3ST1O14792 307 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 ZDHHC11BP0C7U3 371 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 F8A1P23610 371 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 METAP1P53582 386 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CLDN8P56748 225 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CDNFQ49AH0 187 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 FAM69AQ5T7M9 428 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CENPVQ7Z7K6 275 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TMEM139Q8IV31 216 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 OR5H2Q8NGV7 314 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 OR1S1Q8NH92 325 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 C10orf82Q8WW14 230 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 ST8SIA1Q92185 356 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TMEM230Q96A57 120 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 SLCO4A1Q96BD0 722 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 OXGR1Q96P68 337 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 DHRS9Q9BPW9 319 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 MND1Q9BWT6 205 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 DPH3P1Q9H4G8 78 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CCDC59Q9P031 241 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 EXOSC1Q9Y3B2 195 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TRAV27A0A087WT01 109 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TRAV38-1A0A0B4J264 116 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 A0A1W2PPK0 400 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 FAM157AC9JC47 383 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 APEX1P27695 318 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 GPR107Q5VW38 600 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CENPOQ9BU64 300 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 EMC6Q9BV81 110 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TREM2Q9NZC2 230 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 SCP2D1Q9UJQ7 156 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 AGAP5A6NIR3 686 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 ARHGEF15O94989 841 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 PPP3CBP16298 524 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 GM2AP17900 193 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 PYCR1P32322 319 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 GFRA1P56159 465 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TECRLQ5HYJ1 363 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 USP51Q70EK9 711 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 OR10D3Q8NH80 312 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 GCM1Q9NP62 436 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 LAMB4A4D0S4 1761 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 FRG2CA6NGY1 282 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CASC3O15234 703 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 CLPXO76031 633 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 SRD5A2P31213 254 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 ADARP55265 1226 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 PRTGQ2VWP7 1150 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 ZNF789Q5FWF6 425 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 LRRN1Q6UXK5 716 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 TMEM203Q969S6 136 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 SLC22A11Q9NSA0 550 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 NTMQ9P121 344 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 IL17BQ9UHF5 180 aa8.39□□□□□ -1.07
LIMCH1-202ENST00000381753 EI24O14681 340 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 KCNK2O95069 426 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 HLA-HP01893 362 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 RHCEP18577 417 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 MAGEA6P43360 314 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 NOVP48745 357 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 DNAJB13P59910 316 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 GRB2P62993 217 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 CTSL3PQ5NE16 218 aa8.38□□□□□ -1.07
LIMCH1-202ENST00000381753 STEAP4Q687X5 459 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms