RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 IFNGR2P38484 337 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 RPS4XP62701 263 aaKnown RBP16.79■□□□□ 0.28
SYNE4-202ENST00000340477 TOP3AQ13472 1001 aaPredicted RBP16.79■□□□□ 0.28
SYNE4-202ENST00000340477 DEFB113Q30KQ7 82 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 ZNF672Q499Z4 452 aaPredicted RBP16.79■□□□□ 0.28
SYNE4-202ENST00000340477 TBPL2Q6SJ96 375 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 NHLRC1Q6VVB1 395 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 ZNF813Q6ZN06 617 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 TMPRSS11FQ6ZWK6 438 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 TSEN54Q7Z6J9 526 aaKnown RBP16.79■□□□□ 0.28
SYNE4-202ENST00000340477 ZNF611Q8N823 705 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 NOXO1Q8NFA2 376 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 KBTBD8Q8NFY9 601 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 OR13C2Q8NGS9 318 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 OR51A7Q8NH64 312 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 ASB10Q8WXI3 467 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 TMEM54Q969K7 222 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 FAM46AQ96IP4 442 aaKnown RBP16.79■□□□□ 0.28
SYNE4-202ENST00000340477 DHRS1Q96LJ7 313 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 ALPK1Q96QP1 1244 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 FOXC2Q99958 501 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 TXNIPQ9H3M7 391 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 MAGIXQ9H6Y5 334 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 FAIMQ9NVQ4 179 aa16.79■□□□□ 0.28
SYNE4-202ENST00000340477 RAI1Q7Z5J4 1906 aaPredicted RBP16.78■□□□□ 0.28
SYNE4-202ENST00000340477 TSPAN19P0C672 248 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 PGA4P0DJD7 388 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 PGA3P0DJD8 388 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 CD53P19397 219 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 RPL4P36578 427 aaKnown RBP16.78■□□□□ 0.28
SYNE4-202ENST00000340477 RASSF2P50749 326 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 ZNF84P51523 738 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 CTXN1P60606 82 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 CHRNB3Q05901 458 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 LAPTM4AQ15012 233 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 ZBED5Q49AG3 693 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 FAM98BQ52LJ0 330 aaKnown RBP16.78■□□□□ 0.28
SYNE4-202ENST00000340477 PHYHD1Q5SRE7 291 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 MEX3DQ86XN8 651 aaKnown RBP16.78■□□□□ 0.28
SYNE4-202ENST00000340477 OR4K5Q8NGD3 323 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 TMEM171Q8WVE6 324 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 FOXB1Q99853 325 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 DSCAMO60469 2012 aa16.78■□□□□ 0.28
SYNE4-202ENST00000340477 TRBV4-1A0A0J9YWV2 114 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 A6NIZ1 184 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 SMPD2O60906 423 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 TMCC2O75069 709 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 KRT36O76013 467 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 SEC14L2O76054 403 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 FARS2O95363 451 aaKnown RBP16.77■□□□□ 0.28
SYNE4-202ENST00000340477 B4GALT1P15291 398 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 ACADSP16219 412 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 FUT4P22083 530 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 RRM2P31350 389 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 RAP1BP61224 184 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 RPL27P61353 136 aaKnown RBP16.77■□□□□ 0.28
SYNE4-202ENST00000340477 RAP1AP62834 184 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 LSM11P83369 360 aaKnown RBP eCLIP16.77■□□□□ 0.28
SYNE4-202ENST00000340477 CD47Q08722 323 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 TRAP1Q12931 704 aaKnown RBP16.77■□□□□ 0.28
SYNE4-202ENST00000340477 PIWIL3Q7Z3Z3 882 aaKnown RBP16.77■□□□□ 0.28
SYNE4-202ENST00000340477 FNDC8Q8TC99 324 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 CLPTM1LQ96KA5 538 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 SLC38A2Q96QD8 506 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 BTBD10Q9BSF8 475 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 CXorf56Q9H5V9 222 aa16.77■□□□□ 0.28
SYNE4-202ENST00000340477 ROS1P08922 2347 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 HEATR1Q9H583 2144 aaKnown RBP16.76■□□□□ 0.27
SYNE4-202ENST00000340477 SH3PXD2BA1X283 911 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 OR10H3O60404 316 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 ATP5HO75947 161 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 IGHMP01871 453 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 QDPRP09417 244 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 HOXB6P17509 224 aaKnown RBP16.76■□□□□ 0.27
SYNE4-202ENST00000340477 ARR3P36575 388 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 TUBA1BP68363 451 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 TUBA4AP68366 448 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 C3orf36Q3SXR2 165 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 TUBA1AQ71U36 451 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 IGFN1Q86VF2 1251 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 SYT14Q8NB59 555 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 ZNF837Q96EG3 531 aaPredicted RBP16.76■□□□□ 0.27
SYNE4-202ENST00000340477 RSRC1Q96IZ7 334 aaKnown RBP16.76■□□□□ 0.27
SYNE4-202ENST00000340477 TNFRSF13CQ96RJ3 184 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 NELFAQ9H3P2 528 aa16.76■□□□□ 0.27
SYNE4-202ENST00000340477 CISD1Q9NZ45 108 aaKnown RBP16.76■□□□□ 0.27
SYNE4-202ENST00000340477 ALPK2Q86TB3 2170 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 UNC119BA6NIH7 251 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 SHISA9B4DS77 424 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 XKRYO14609 159 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 CDC42EP2O14613 210 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 DHHO43323 396 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 TRMUO75648 421 aaKnown RBP16.75■□□□□ 0.27
SYNE4-202ENST00000340477 DNAJC8O75937 253 aaPredicted RBP16.75■□□□□ 0.27
SYNE4-202ENST00000340477 UBL3O95164 117 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 NDUFB2O95178 105 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 CRYAAP02489 173 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 CD79AP11912 226 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 ACVR1BP36896 505 aa16.75■□□□□ 0.27
SYNE4-202ENST00000340477 ARMC4Q5T2S8 1044 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms