RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 SLC17A1Q14916 467 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SMAD2Q15796 467 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 AANATQ16613 207 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 HNRNPA1L2Q32P51 320 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 HENMT1Q5T8I9 393 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 OR5M10Q6IEU7 315 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 PARS2Q7L3T8 475 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF480Q8WV37 535 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MED20Q9H944 212 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ADAM29Q9UKF5 820 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MRPS28Q9Y2Q9 187 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 FAM208AQ9UK61 1670 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 GABARAPH6UMI1 98 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 AP1G1O43747 822 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 GABARAPO95166 117 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 TRAPPC2P0DI81 140 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 TRAPPC2BP0DI82 140 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 F3P13726 295 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 IMPA1P29218 277 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CSNK1DP48730 415 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SLC5A12Q1EHB4 618 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SLC39A5Q6ZMH5 540 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CPXM2Q8N436 756 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 C15orf54Q8N8G6 183 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MFSD9Q8NBP5 474 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 RNF170Q96K19 258 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 URGCP-MRPS24S4R325 110 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 NSG1A0A0A6YYJ2 146 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 I6L893 689 aaPredicted RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A6P0DMU7 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A5P0DMU8 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A7P0DMV0 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A8P0DMV1 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A9P0DMV2 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ELK1P19419 428 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 DPP4P27487 766 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CTSCP53634 463 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SIRPAP78324 504 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 LEXMQ3ZCV2 418 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 LBHQ53QV2 105 aaPredicted RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A2Q5DJT8 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A1Q5HYN5 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 OR6S1Q8NH40 331 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CT45A3Q8NHU0 189 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 IFI44Q8TCB0 444 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SECTM1Q8WVN6 248 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ASB11Q8WXH4 323 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF845Q96IR2 970 aaPredicted RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SEC22AQ96IW7 307 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CPPED1Q9BRF8 314 aaPredicted RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 FAM103A1Q9BTL3 118 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 DUSP23Q9BVJ7 150 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SEMA4CQ9C0C4 833 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MYH7BA7E2Y1 1941 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MYH6P13533 1939 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 OR2C1O95371 312 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CLDN1O95832 211 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 DDAH2O95865 285 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 USF1P22415 310 aaPredicted RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 DAPP51397 102 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 OXA1LQ15070 435 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 LRRC26Q2I0M4 334 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SFXN4Q6P4A7 337 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 B3GLCTQ6Y288 498 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 YIPF5Q969M3 257 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MEGF10Q96KG7 1140 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 FYTTD1Q96QD9 318 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 FIZ1Q96SL8 496 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ATOH8Q96SQ7 321 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ALG12Q9BV10 488 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 LMAN1LQ9HAT1 526 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 DLG5Q8TDM6 1919 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 IGKV6D-21A0A0A0MT36 114 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 CDC14CA4D256 554 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 TMX2-CTNND1H3BSU7 103 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 AIFM1O95831 613 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 SLC2A1P11166 492 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 PTBP1P26599 531 aaKnown RBP eCLIP9.22□□□□□ -0.934e-6■■■■□ 21.1
COL4A6-208ENST00000538570 PSMB5P28074 263 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 P2RX1P51575 399 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ZP2Q05996 745 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ARL16Q0P5N6 197 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 C5orf46Q6UWT4 87 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MBOAT2Q6ZWT7 520 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 OR14A16Q8NHC5 309 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 KCNG3Q8TAE7 436 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 MUCL1Q96DR8 90 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 PDLIM5Q96HC4 596 aaKnown RBP9.22□□□□□ -0.93
COL4A6-208ENST00000538570 NIPSNAP3BQ9BS92 247 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 KATNB1Q9BVA0 655 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 FBXL4Q9UKA2 621 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 ETV7Q9Y603 341 aa9.22□□□□□ -0.93
COL4A6-208ENST00000538570 NDUFS8O00217 210 aa9.21□□□□□ -0.93
COL4A6-208ENST00000538570 HSPB6O14558 160 aa9.21□□□□□ -0.93
COL4A6-208ENST00000538570 RPLP1P05386 114 aaKnown RBP9.21□□□□□ -0.93
COL4A6-208ENST00000538570 ALDOCP09972 364 aaKnown RBP9.21□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF728P0DKX0 622 aa9.21□□□□□ -0.93
COL4A6-208ENST00000538570 HCCSP53701 268 aa9.21□□□□□ -0.93
COL4A6-208ENST00000538570 CLDN17P56750 224 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms