RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SELPLGQ14242 412 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 CARTPTQ16568 116 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF813Q6ZN06 617 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 SPATA21Q7Z572 469 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 RETREG3Q86VR2 466 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 SNX32Q86XE0 403 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 SLC30A8Q8IWU4 369 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 GPR32P1Q8NGA4 272 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 OR5J2Q8NH18 312 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 TSPEARQ8WU66 669 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 THOC1Q96FV9 657 aaKnown RBP14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 DOK1Q99704 481 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 BEX2Q9BXY8 128 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 ULBP2Q9BZM5 246 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 TRIM33Q9UPN9 1127 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 POFUT2Q9Y2G5 429 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 TMEM129A0AVI4 362 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 LMX1BO60663 402 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 HLA-HP01893 362 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 ERCC1P07992 297 aaPredicted RBP14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 CD79AP11912 226 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 APEHP13798 732 aaKnown RBP14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 AHCYP23526 432 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 SNTB2Q13425 540 aaKnown RBP14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 NFYCQ13952 458 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 DAG1Q14118 895 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 NPTX1Q15818 432 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 GSG1Q2KHT4 349 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 ENTPD8Q5MY95 495 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 PATL1Q86TB9 770 aaKnown RBP14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 WDFY1Q8IWB7 410 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 PHC2Q8IXK0 858 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 SVOPLQ8N434 492 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF540Q8NDQ6 660 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 OR6T1Q8NGN1 323 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 OR6N1Q8NGY5 312 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 NEU4Q8WWR8 484 aaPredicted RBP14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 KAT8Q9H7Z6 458 aaKnown RBP14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 NOX3Q9HBY0 568 aa14.33□□□□□ -0.12
CCDC28B-204ENST00000469003 IGHV4-61A0A0C4DH41 118 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 CPSF4LA6NMK7 179 aaKnown RBP14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 C11orf98E9PRG8 122 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 SERPINI2O75830 405 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 OR6A2O95222 327 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 LYPD3O95274 346 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 STAMBPO95630 424 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 ADORA3P0DMS8 318 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 NR4A1P22736 598 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 PCGF2P35227 344 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 IQCCQ4KMZ1 466 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 FAM166AQ6J272 317 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 KRT80Q6KB66 452 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 WDR88Q6ZMY6 472 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 ADAMTS16Q8TE57 1224 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF75AQ96N20 296 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 FOXB1Q99853 325 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 SIKE1Q9BRV8 207 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 BPESC1Q9GZL8 116 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 SHARPINQ9H0F6 387 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 DENND2DQ9H6A0 471 aaPredicted RBP14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 KCNS2Q9ULS6 477 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 CMAHPQ9Y471 501 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 CUBNO60494 3623 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 MALRD1Q5VYJ5 2156 aa14.32□□□□□ -0.12
CCDC28B-204ENST00000469003 TRAPPC13A5PLN9 417 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 EDF1O60869 148 aaKnown RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 THY1P04216 161 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 IFNGR1P15260 489 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 B4GALT1P15291 398 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF14P17017 642 aaPredicted RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF23P17027 643 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 CD247P20963 164 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 IGFBP5P24593 272 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 GIFP27352 417 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 CSNK1A1P48729 337 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 BIDP55957 195 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 PIGFQ07326 219 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 ZP4Q12836 540 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF74Q16587 644 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 INTS11Q5TA45 600 aaKnown RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 TTC33Q6PID6 262 aaPredicted RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 HDXQ7Z353 690 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 RBM45Q8IUH3 476 aaKnown RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 CDK20Q8IZL9 346 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 OR4D11Q8NGI4 311 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 VANGL1Q8TAA9 524 aaPredicted RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 TMEM158Q8WZ71 300 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 TAMM41Q96BW9 452 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 MSI2Q96DH6 328 aaKnown RBP14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 MS4A3Q96HJ5 214 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 MPP4Q96JB8 637 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 PCDHAC1Q9H158 963 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 VIPAS39Q9H9C1 493 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 NPHS2Q9NP85 383 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 DYNLRB1Q9NP97 96 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 NANSQ9NR45 359 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 ZNF224Q9NZL3 707 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 SPEF1Q9Y4P9 236 aa14.31□□□□□ -0.12
CCDC28B-204ENST00000469003 LOC100289279A0A1B0GTE1 492 aa14.3□□□□□ -0.12
CCDC28B-204ENST00000469003 UBL3O95164 117 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms