RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ANGPT2O15123 496 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 PHF1O43189 567 aaPredicted RBP6.13□□□□□ -1.43
VPS41-208ENST00000448833 CHP2O43745 196 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 SYNGR3O43761 229 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 MFN2O95140 757 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 UBL3O95164 117 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 RAB36O95755 333 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 TGFAP01135 160 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 CD79AP11912 226 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 HOXB9P17482 250 aaPredicted RBP6.13□□□□□ -1.43
VPS41-208ENST00000448833 NR4A1P22736 598 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 AHCYP23526 432 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 THBS4P35443 961 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 GLRXP35754 106 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 AQP5P55064 265 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 RAB1AP62820 205 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 HOXC5Q00444 222 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 ZP4Q12836 540 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 NPRL3Q12980 569 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 CAMK2DQ13557 499 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 MOGQ16653 247 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 CYP51A1Q16850 503 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 GTDC1Q4AE62 458 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 GKAP1Q5VSY0 366 aaPredicted RBP6.13□□□□□ -1.43
VPS41-208ENST00000448833 TTC33Q6PID6 262 aaPredicted RBP6.13□□□□□ -1.43
VPS41-208ENST00000448833 UNQ6126/PRO20091Q6UXV3 157 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 ZNF813Q6ZN06 617 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 LIAT1Q6ZQX7 453 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 LINGO2Q7L985 606 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 MAVSQ7Z434 540 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 HDDC2Q7Z4H3 204 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 SPATA21Q7Z572 469 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 FUNDC1Q8IVP5 155 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 TMEM123Q8N131 208 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 TEX29Q8N6K0 151 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 OR5J2Q8NH18 312 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 SLC26A7Q8TE54 656 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 UBASH3BQ8TF42 649 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 CKAP2Q8WWK9 683 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 HTRA1Q92743 480 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 MPP4Q96JB8 637 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 DOK1Q99704 481 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 MCHR1Q99705 422 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 ULBP2Q9BZM5 246 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 LRMDAQ9H2I8 198 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 NANSQ9NR45 359 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 SLC25A37Q9NYZ2 338 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 VAPAQ9P0L0 249 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 B3GAT1Q9P2W7 334 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 STX18Q9P2W9 335 aaKnown RBP6.13□□□□□ -1.43
VPS41-208ENST00000448833 ZNF346Q9UL40 294 aaKnown RBP6.13□□□□□ -1.43
VPS41-208ENST00000448833 NDUFAF1Q9Y375 327 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 TRBV5-3A0A0A0MS03 114 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 IGHV2OR16-5A0A0B4J2B6 119 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 CENPBD1B2RD01 187 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 HMGB1P1B2RPK0 211 aaPredicted RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 M0R233 179 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 PLPP3O14495 311 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 TRAF3IP2O43734 574 aaPredicted RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 TPST1O60507 370 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 STAMBPO95630 424 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 NPPAP01160 153 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 IFNA14P01570 189 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 BGLAPP02818 100 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 MT-ND5P03915 603 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 TACSTD2P09758 323 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 ADORA3P0DMS8 318 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 OR8G3PP0DMU2 310 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 NR2C1P13056 603 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 ANPEPP15144 967 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 IFNGR1P15260 489 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 HTR2AP28223 471 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 CALCRP30988 508 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 IFNA8P32881 189 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 CSNK1A1P48729 337 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 CDH12P55289 794 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 TMEM33P57088 247 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 MRPS11P82912 194 aaKnown RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 HGFACQ04756 655 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 LGALS3BPQ08380 585 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 SNTB2Q13425 540 aaKnown RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 NPTX1Q15818 432 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 ADRM1Q16186 407 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 NRN1LQ496H8 165 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 RUNDC3AQ59EK9 446 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 PAGE3Q5JUK9 113 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 FAM209AQ5JX71 171 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 FAM120AOSQ5T036 256 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 TMEM53Q6P2H8 277 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 LINC00114Q6XXX2 140 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 VASH1Q7L8A9 365 aaPredicted RBP6.12□□□□□ -1.43
VPS41-208ENST00000448833 MDP1Q86V88 176 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 C1orf174Q8IYL3 243 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 SVOPLQ8N434 492 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 DPP10Q8N608 796 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 ANKS4BQ8N8V4 417 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 LINC01356Q8N9X3 169 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 PLPP7Q8NBV4 271 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 OR1J2Q8NGS2 313 aa6.12□□□□□ -1.43
VPS41-208ENST00000448833 OR6X1Q8NH79 312 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms