RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MIPP30301 263 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 TRIM23P36406 574 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 CAPZBP47756 277 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 TNFSF10P50591 281 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 GNB2P62879 340 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 DYNLT1P63172 113 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 UBE2IP63279 158 aaKnown RBP2.17□□□□□ -2.06
SCFD1-219ENST00000556413 GBE1Q04446 702 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 SCARB2Q14108 478 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 DPYSQ14117 519 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 NFE2L1Q14494 772 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 KRT31Q15323 416 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 PARP15Q460N3 678 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 FAM219BQ5XKK7 198 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 C2orf66Q6UXQ4 117 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 Q6ZRG5 221 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 C17orf82Q86X59 251 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-219ENST00000556413 TRAPPC5Q8IUR0 188 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 TMEM126BQ8IUX1 230 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 CCDC50Q8IVM0 306 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 ZNF547Q8IVP9 402 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 MCOLN2Q8IZK6 566 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 OR8H3Q8N146 312 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 UMODL1-AS1Q8N2C9 162 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 FBXW8Q8N3Y1 598 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 SFRP1Q8N474 314 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 C2orf73Q8N5S3 287 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-219ENST00000556413 SIDT2Q8NBJ9 832 aaKnown RBP2.17□□□□□ -2.06
SCFD1-219ENST00000556413 MSANTD4Q8NCY6 345 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 GPR26Q8NDV2 337 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 GDAP1Q8TB36 358 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 PIH1D2Q8WWB5 315 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 NTAN1Q96AB6 310 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 ECHDC3Q96DC8 303 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 IMMP1LQ96LU5 166 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 ILKAPQ9H0C8 392 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-219ENST00000556413 ING2Q9H160 280 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 UGT1A7Q9HAW7 530 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 UGT1A10Q9HAW8 530 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 UGT1A8Q9HAW9 530 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 ADGRL4Q9HBW9 690 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 LHX9Q9NQ69 397 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 SENP1Q9P0U3 644 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 KLK12Q9UKR0 248 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 HYOU1Q9Y4L1 999 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 UNC79Q9P2D8 2635 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 SPTA1P02549 2419 aa2.17□□□□□ -2.06
SCFD1-219ENST00000556413 MN1Q10571 1320 aaPredicted RBP2.17□□□□□ -2.06
SCFD1-219ENST00000556413 NBASA2RRP1 2371 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 SCN8AQ9UQD0 1980 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 A0A0J9YYE9 177 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 SPRR5A0A1B0GTR4 108 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 GSAPA4D1B5 854 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 OR6C74A6NCV1 312 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 SLC9B1P1A6NJY1 282 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 PRPSAP2O60256 369 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 LSM8O95777 96 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 GNA14O95837 355 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 JCHAINP01591 159 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 TRBC1P01850 177 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CALB1P05937 261 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 SFTPCP11686 197 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 KPNA2P52292 529 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 STC1P52823 247 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CDH6P55285 790 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 AP1S1P61966 158 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 UBXN1Q04323 297 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 MSLNQ13421 630 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 HEPACAMQ14CZ8 416 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CHRNA6Q15825 494 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ZIC1Q15915 447 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 PAN3Q58A45 887 aaKnown RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 MLIPQ5VWP3 458 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 NCBP2-AS2Q69YL0 99 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ATL3Q6DD88 541 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 IYDQ6PHW0 289 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 TMEM220Q6QAJ8 160 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 FAM151BQ6UXP7 276 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 LINC00696Q6ZRV3 163 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 TMEM26Q6ZUK4 368 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 STRADAQ7RTN6 431 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ZNF571Q7Z3V5 609 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 PHF13Q86YI8 300 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 MKXQ8IYA7 352 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CATSPER1Q8NEC5 780 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 NEK11Q8NG66 645 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 OR6C4Q8NGE1 309 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 OR4L1Q8NH43 312 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 KIR2DL5BQ8NHK3 375 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ZNF721Q8TF20 911 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ULK4Q96C45 1275 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 C8orf44Q96CB5 159 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CXorf40BQ96DE9 158 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 COX14Q96I36 57 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 ZNF641Q96N77 438 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CATSPER2Q96P56 530 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 CSPG4P5Q96PW8 444 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 GOLPH3Q9H4A6 298 aa2.16□□□□□ -2.06
SCFD1-219ENST00000556413 RBM22Q9NW64 420 aaKnown RBP eCLIP2.16□□□□□ -2.06
SCFD1-219ENST00000556413 KLRF1Q9NZS2 232 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms