RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MRI1Q9BV20 369 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 POTEKPQ9BYX7 375 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 SPHK1Q9NYA1 384 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF223Q9UK11 482 aaPredicted RBP11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 M0QYG6 137 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 BCL2L11O43521 198 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 RAB3DO95716 219 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 CSF2RBP32927 897 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 PRKXP51817 358 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 SNRPEP62304 92 aaKnown RBP11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 GAS6Q14393 721 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ARHGAP19Q14CB8 494 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 TCEA2Q15560 299 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 TSC22D1Q15714 1073 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ENPP7Q6UWV6 458 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 MOB3CQ70IA8 216 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 RNF44Q7L0R7 432 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 NRROSQ86YC3 692 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 LRRC25Q8N386 305 aaPredicted RBP11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 C10orf53Q8N6V4 93 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ZCCHC10Q8TBK6 192 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 PHYHIPQ92561 330 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ARL11Q969Q4 196 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 SLC46A2Q9BY10 475 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ATG5Q9H1Y0 275 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 WDR13Q9H1Z4 485 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ZFP57Q9NU63 452 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 MKL2Q9ULH7 1088 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 PCYT1BQ9Y5K3 369 aaPredicted RBP11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 TBC1D3KA0A087X1G2 549 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TBC1D3BA6NDS4 549 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TBC1D3FA6NER0 549 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SCAMP1O15126 338 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 DBIP07108 87 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 PRDX1Q06830 199 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 MPPED2Q15777 294 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 FNDC3BQ53EP0 1204 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TBC1D3GQ6DHY5 549 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SLC35F3Q8IY50 421 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 CXorf40AQ8TE69 158 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 CASTOR1Q8WTX7 329 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TSEN15Q8WW01 171 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 IRF7Q92985 503 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 ADAD1Q96M93 576 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SDF2Q99470 211 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 C2orf42Q9NWW7 574 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF337Q9Y3M9 751 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 KIF26AQ9ULI4 1882 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 EIF3GO75821 320 aaKnown RBP eCLIP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 AKR7A3O95154 331 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 HLA-AP01891 365 aaKnown RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SOD2P04179 222 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SLC2A5P22732 501 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SLC7A9P82251 487 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 SP3Q02447 781 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 PLA2G7Q13093 441 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 KCNAB1Q14722 419 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TMEM215Q68D42 235 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TMPRSS11FQ6ZWK6 438 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 OR2L5Q8NG80 312 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 GAS2L1Q99501 681 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 NKX3-1Q99801 234 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 GAREM1Q9H706 876 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 MEPEQ9NQ76 525 aaPredicted RBP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 HAO2Q9NYQ3 351 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 ETV7Q9Y603 341 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 ANAPC1Q9H1A4 1944 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 LRRC72A6NJI9 287 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 C4orf51C9J302 202 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 CTNSO60931 367 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 PMS2P2O95744 297 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 IFNA4P05014 189 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 DDX6P26196 483 aaKnown RBP eCLIP11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 AQP2P41181 271 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 TEAD2Q15562 447 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 OR7A5Q15622 319 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 Q499Y3 187 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 UQCC3Q6UW78 93 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 KCTD9Q7L273 389 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF619Q8N2I2 560 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 CREBZFQ9NS37 354 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 GPR34Q9UPC5 381 aa11.76□□□□□ -0.53
SFSWAP-209ENST00000540469 A0A087WV48 116 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 TRAV14DV4A0A0A6YYC5 116 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 ELOA3DA6NLF2 546 aaPredicted RBP11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 EEF1E1-BLOC1S5C9J1V9 151 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 RNGTTO60942 597 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 OR2F2O95006 317 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 TACSTD2P09758 323 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 VAMP1P23763 118 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 NANOS3P60323 173 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 SKP1P63208 163 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 AIMP2Q13155 320 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 OR2F1Q13607 317 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 ELOA3BQ3SY89 546 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 ALG10BQ5I7T1 473 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 RBMS3Q6XE24 437 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 KCNRGQ8N5I3 272 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 LINC01555Q8NAE3 123 aa11.75□□□□□ -0.53
SFSWAP-209ENST00000540469 ELOA3Q8NG57 546 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms