RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OR4A8P0C604 315 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 ARR3P36575 388 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 IDH3GP51553 393 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 LSM11P83369 360 aaKnown RBP eCLIP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 SWT1Q5T5J6 900 aaKnown RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 CYB5R2Q6BCY4 276 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 VHLLQ6RSH7 139 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 MYPOPQ86VE0 399 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 LRR1Q96L50 414 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 VRK1Q99986 396 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 WFDC6Q9BQY6 131 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 TMEM43Q9BTV4 400 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 PLK3Q9H4B4 646 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF442Q9H7R0 627 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 MYOZ1Q9NP98 299 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 MRPL39Q9NYK5 338 aaKnown RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 LEF1Q9UJU2 399 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 FBXO9Q9UK97 447 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 CDC42EP3Q9UKI2 254 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF503-AS2A6NEH8 195 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 M0R3G1 203 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 IGHV4-31P0DP07 118 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 HLA-DOBP13765 273 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 PPOXP50336 477 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 CDH12P55289 794 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 PCBP3P57721 371 aaKnown RBP14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 POU3F1Q03052 451 aaPredicted RBP14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 HGFACQ04756 655 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 RBBP4Q09028 425 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 PMS2P3Q13401 168 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 PHYHD1Q5SRE7 291 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 NHLRC1Q6VVB1 395 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 DHDDSQ86SQ9 333 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 MDP1Q86V88 176 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 PTOV1Q86YD1 416 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 C20orf196Q8IYI0 205 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 DPP10Q8N608 796 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 C11orf65Q8NCR3 313 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 MOGAT1Q96PD6 335 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 KCNK17Q96T54 332 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 PIMREGQ9BSJ6 248 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 INTS9Q9NV88 658 aaKnown RBP14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 USP22Q9UPT9 525 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 NOX1Q9Y5S8 564 aa14.37□□□□□ -0.11
CCDC28B-204ENST00000469003 IGHV2OR16-5A0A0B4J2B6 119 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 LOC390937A0A1W2PQ73 354 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 VSTM5A8MXK1 200 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 FMO6PO60774 539 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 FAM157CP0CG43 387 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF16P17020 682 aaPredicted RBP14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 NR4A2P43354 598 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 GZMKP49863 264 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 PUDPQ08623 228 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 NPRL3Q12980 569 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 CARD17Q5XLA6 110 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF613Q6PF04 617 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 ANKS4BQ8N8V4 417 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 SMYD1Q8NB12 490 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 IL17RDQ8NFM7 739 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 CKAP2Q8WWK9 683 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 ANKRD27Q96NW4 1050 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 CGREF1Q99674 301 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 MCHR1Q99705 422 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 ARHGDIGQ99819 225 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 EMC6Q9BV81 110 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF385DQ9H6B1 395 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 B3GAT2Q9NPZ5 323 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 MED29Q9NX70 200 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 NDUFAF1Q9Y375 327 aa14.36□□□□□ -0.11
CCDC28B-204ENST00000469003 SLC35F4A4IF30 521 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 HMGB1P1B2RPK0 211 aaPredicted RBP14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 hCG_2039718K7EN88 272 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 M0R3H8 397 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 PLPP3O14495 311 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 SEC14L2O76054 403 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 MT-ATP6P00846 226 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 NPR2P20594 1047 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 THBS4P35443 961 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 CAPZA2P47755 286 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 GGTLC2Q14390 218 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 DUSP7Q16829 419 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 CYP51A1Q16850 503 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 LINC00114Q6XXX2 140 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF627Q7L945 461 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 PXKQ7Z7A4 578 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 C10orf53Q8N6V4 93 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 TXNDC15Q96J42 360 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 MAGEB18Q96M61 343 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 FOXN4Q96NZ1 517 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 RAB1BQ9H0U4 201 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 B3GNT2Q9NY97 397 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 LPAR3Q9UBY5 353 aa14.35□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF726A6NNF4 738 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 LRRN3E7EW58 273 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 M0QX08 132 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 ANGPT2O15123 496 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 CHP2O43745 196 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 OPN1SWP03999 348 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 MTPNP58546 118 aa14.34□□□□□ -0.11
CCDC28B-204ENST00000469003 CAMK2DQ13557 499 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms