RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TSPO2Q5TGU0 170 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 NIPAL3Q6P499 406 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.45□□□□□ -0.74
VPS52-213ENST00000461743 TMEM123Q8N131 208 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 NINJ1Q92982 152 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 MCUR1Q96AQ8 359 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 ASB9Q96DX5 294 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 C7orf34Q96L11 122 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 LRR1Q96L50 414 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 OBP2BQ9NPH6 170 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 KRCC1Q9NPI7 259 aaPredicted RBP10.45□□□□□ -0.74
VPS52-213ENST00000461743 SLC7A10Q9NS82 523 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 TAS2R1Q9NYW7 299 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 NDUFAF4Q9P032 175 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 TMEM5Q9Y2B1 443 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 MAGED1Q9Y5V3 778 aaPredicted RBP10.45□□□□□ -0.74
VPS52-213ENST00000461743 OTOGQ6ZRI0 2925 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 CIB4A0PJX0 185 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 CENPBD1B2RD01 187 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 LRRN3E7EW58 273 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 KRT33AO76009 404 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 STAMBPO95630 424 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 HPRP00739 348 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 FABP3P05413 133 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 H1F0P07305 194 aaKnown RBP10.44□□□□□ -0.74
VPS52-213ENST00000461743 PTNP21246 168 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 CBLP22681 906 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 HOXC12P31275 282 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 RPS4XP62701 263 aaKnown RBP10.44□□□□□ -0.74
VPS52-213ENST00000461743 VLDLRP98155 873 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 PRKCDQ05655 676 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 BLMHQ13867 455 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 PPA1Q15181 289 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 TAF11Q15544 211 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 TAB1Q15750 504 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 RINLQ6ZS11 566 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 MBOAT2Q6ZWT7 520 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 LSRQ86X29 649 aaPredicted RBP10.44□□□□□ -0.74
VPS52-213ENST00000461743 PFN4Q8NHR9 129 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 BPIFA2Q96DR5 249 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 MUCL1Q96DR8 90 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 MUS81Q96NY9 551 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 ALKBH3Q96Q83 286 aaPredicted RBP10.44□□□□□ -0.74
VPS52-213ENST00000461743 OR2M2Q96R28 347 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 ZNF347Q96SE7 839 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 PIP5K1AQ99755 562 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 TRIM15Q9C019 465 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 NDEL1Q9GZM8 345 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 MAGIXQ9H6Y5 334 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 NMNAT1Q9HAN9 279 aaPredicted RBP10.44□□□□□ -0.74
VPS52-213ENST00000461743 B3GAT2Q9NPZ5 323 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 C20orf141Q9NUB4 165 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 HIF3AQ9Y2N7 669 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 AMDHD2Q9Y303 409 aa10.44□□□□□ -0.74
VPS52-213ENST00000461743 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 J3KTA2 159 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 RNF13O43567 381 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 RAD51DO75771 328 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 ATP5HO75947 161 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 IGHV3-9P01782 118 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 RPSAP08865 295 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 NR2C1P13056 603 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 IFI30P13284 250 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 HOXB1P14653 301 aaPredicted RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 FUT1P19526 365 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 ATP6V1B2P21281 511 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 AHCYP23526 432 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 MAGEA2P43356 314 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 RASSF2P50749 326 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 DAP3P51398 398 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 RPL18Q07020 188 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 TRAP1Q12931 704 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 GABRA6Q16445 453 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 HMBOX1Q6NT76 420 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 KLHL24Q6TFL4 600 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 SEZ6L2Q6UXD5 910 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 NHLRC1Q6VVB1 395 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 ZNF730Q6ZMV8 503 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 RRM2BQ7LG56 351 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 PIWIL3Q7Z3Z3 882 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 TSEN54Q7Z6J9 526 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 CDH24Q86UP0 819 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 DHFR2Q86XF0 187 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 CDC20BQ86Y33 519 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 NRMQ8IXM6 262 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 CDK20Q8IZL9 346 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 KDM8Q8N371 416 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 GPR137CQ8N3F9 429 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 FAM86B1Q8N7N1 296 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 OR6X1Q8NH79 312 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 MAGEE2Q8TD90 523 aaPredicted RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 ZC3HAV1LQ96H79 300 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 ZNF570Q96NI8 536 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 ESRP2Q9H6T0 727 aaKnown RBP10.43□□□□□ -0.74
VPS52-213ENST00000461743 IL1RAPQ9NPH3 570 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 ETAA1Q9NY74 926 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 TAS2R5Q9NYW4 299 aa10.43□□□□□ -0.74
VPS52-213ENST00000461743 A0A087WUU8 490 aa10.42□□□□□ -0.74
VPS52-213ENST00000461743 A0A1W2PRG6 482 aa10.42□□□□□ -0.74
VPS52-213ENST00000461743 ZNF726A6NNF4 738 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms