RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TRMT5Q32P41 509 aaKnown RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 RPS26P11Q5JNZ5 115 aaPredicted RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 AGBL2Q5U5Z8 902 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 SLC2A7Q6PXP3 512 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 PXKQ7Z7A4 578 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 DPPA2Q7Z7J5 298 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 ARMC8Q8IUR7 673 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 C11orf65Q8NCR3 313 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 HIPK4Q8NE63 616 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 RNF217Q8TC41 542 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 TSPEARQ8WU66 669 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 DYDC1Q8WWB3 177 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 RASSF5Q8WWW0 418 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 STON2Q8WXE9 905 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 HPS1Q92902 700 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 MAL2Q969L2 176 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 TAAR8Q969N4 342 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 KTI12Q96EK9 354 aaPredicted RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 ALKBH3Q96Q83 286 aaPredicted RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 TMEM43Q9BTV4 400 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 PTDSS2Q9BVG9 487 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 GPR35Q9HC97 309 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 MRPL39Q9NYK5 338 aaKnown RBP6.15□□□□□ -1.42
VPS41-208ENST00000448833 ANGPT4Q9Y264 503 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 POFUT2Q9Y2G5 429 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 CMAHPQ9Y471 501 aa6.15□□□□□ -1.42
VPS41-208ENST00000448833 MALRD1Q5VYJ5 2156 aa6.15□□□□□ -1.43
VPS41-208ENST00000448833 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.14□□□□□ -1.431e-7■■■■■ 39.2
VPS41-208ENST00000448833 A0A096LNT2 108 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 A0A096LPE4 126 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 LOC100289279A0A1B0GTE1 492 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 A0A1W2PPZ6 126 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SLC22A23A1A5C7 686 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 VWC2LB2RUY7 222 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 MS4A18H0YCH9 400 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 hCG_2039718K7EN88 272 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 M0R082 166 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 NR5A2O00482 541 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 FARS2O95363 451 aaKnown RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 PTHP01270 115 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 HIST1H2ABP04908 130 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 IGHV4-31P0DP07 118 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 DAOP14920 347 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 ZNF23P17027 643 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SRD5A1P18405 259 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 GIFP27352 417 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 GRPRP30550 384 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 CAPZA2P47755 286 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 IDH3AP50213 366 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SELENOVP59797 346 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 GALK2Q01415 458 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 PUDPQ08623 228 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 DAG1Q14118 895 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 GGTLC2Q14390 218 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 OR1Q1Q15612 314 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 CARTPTQ16568 116 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 GSG1Q2KHT4 349 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 CEACAM16Q2WEN9 425 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 MS4A18Q3C1V0 323 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 MMEL1Q495T6 779 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 AGKQ53H12 422 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 BEND6Q5SZJ8 279 aaPredicted RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 INTS11Q5TA45 600 aaKnown RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 LIPNQ5VXI9 398 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 METTL21CQ5VZV1 264 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 ZNF613Q6PF04 617 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 VHLLQ6RSH7 139 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 HIST3H2AQ7L7L0 130 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 ZNF627Q7L945 461 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 PIWIL3Q7Z3Z3 882 aaKnown RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 PATL1Q86TB9 770 aaKnown RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 C20orf196Q8IYI0 205 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 KDM8Q8N371 416 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 ZNF786Q8N393 782 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 C10orf53Q8N6V4 93 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 OR9I1Q8NGQ6 314 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 OR6N1Q8NGY5 312 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 NFKBIDQ8NI38 313 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 ZNF417Q8TAU3 575 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 HIST1H2ACQ93077 130 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SLC41A3Q96GZ6 507 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 FOXN4Q96NZ1 517 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SORCS2Q96PQ0 1159 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 OR2M2Q96R28 347 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 ZNF587Q96SQ5 575 aaPredicted RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 SH3GL1Q99961 368 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SIKE1Q9BRV8 207 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 SLC19A3Q9BZV2 496 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 C1orf198Q9H425 327 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 DYNLRB1Q9NP97 96 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 KLHL14Q9P2G3 628 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 LEF1Q9UJU2 399 aaPredicted RBP6.14□□□□□ -1.43
VPS41-208ENST00000448833 CHST2Q9Y4C5 530 aa6.14□□□□□ -1.43
VPS41-208ENST00000448833 DNHD1Q96M86 4753 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 A0A0B4J2E0 115 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 A0A1B0GX12 115 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 SLC35F4A4IF30 521 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 HTR3EA5X5Y0 456 aa6.13□□□□□ -1.43
VPS41-208ENST00000448833 M0R3G1 203 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms