RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SYNDIG1Q9H7V2 258 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 IGHV3-20A0A0C4DH32 117 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 APODP05090 189 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 GLAP06280 429 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 GLULP15104 373 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 PRKAR1BP31321 381 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TNK1Q13470 666 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TOMM34Q15785 309 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 SLC22A6Q4U2R8 563 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TMEM35AQ53FP2 167 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 TMEM196Q5HYL7 178 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 C1orf189Q5VU69 101 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 ATRAIDQ6UW56 229 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 ADAMTSL4Q6UY14 1074 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 USP53Q70EK8 1073 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 RHOUQ7L0Q8 258 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 KCTD9Q7L273 389 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 JAZF1Q86VZ6 243 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 JAGN1Q8N5M9 183 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CHST4Q8NCG5 386 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CPNE2Q96FN4 548 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 KRCC1Q9NPI7 259 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 PRMT8Q9NR22 394 aaPredicted RBP7.91□□□□□ -1.14
USP40-203ENST00000427112 CENPMQ9NSP4 180 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 CALML5Q9NZT1 146 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 KLHL9Q9P2J3 617 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 COLEC10Q9Y6Z7 277 aa7.91□□□□□ -1.14
USP40-203ENST00000427112 MYO7BQ6PIF6 2116 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ZNHIT1O43257 154 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 LMX1BO60663 402 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 F12P00748 615 aaPredicted RBP7.9□□□□□ -1.14
USP40-203ENST00000427112 IFNGP01579 166 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 LPLP06858 475 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ACSM4P0C7M7 580 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 LINC00271P0C7V0 271 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 PI3P19957 117 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 STARP49675 285 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 HSF2Q03933 536 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 TMEM52BQ4KMG9 183 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ARHGAP40Q5TG30 622 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ZNF767PQ75MW2 155 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 PM20D2Q8IYS1 436 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 MFSD9Q8NBP5 474 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 CA5BP1Q8WTZ4 195 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 FCAMRQ8WWV6 532 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 GFI1Q99684 422 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 SOSTQ9BQB4 213 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 NUDT22Q9BRQ3 303 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 TRAF4Q9BUZ4 470 aaPredicted RBP7.9□□□□□ -1.14
USP40-203ENST00000427112 ALG12Q9BV10 488 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ATG5Q9H1Y0 275 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 TMEM231Q9H6L2 316 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 EXOGQ9Y2C4 368 aaKnown RBP7.9□□□□□ -1.14
USP40-203ENST00000427112 CACNA1DQ01668 2161 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 IRGMA1A4Y4 181 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 KRT33AO76009 404 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 SPI1P17947 270 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 PSMB1P20618 241 aaKnown RBP7.9□□□□□ -1.14
USP40-203ENST00000427112 RBMS1P29558 406 aaKnown RBP7.9□□□□□ -1.14
USP40-203ENST00000427112 SLC6A6P31641 620 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ARHGAP19Q14CB8 494 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 CDK5R1Q15078 307 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 TAF13Q15543 124 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 C9orf50Q5SZB4 431 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ACBD4Q8NC06 268 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 WFIKKN2Q8TEU8 576 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 SCMH1Q96GD3 660 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 OR2A5Q96R48 311 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 FAM83CQ9BQN1 747 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 PDCD10Q9BUL8 212 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 OR11A1Q9GZK7 315 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 EXO5Q9H790 373 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 HEXA-AS1Q9H8Q6 139 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 DHCR7Q9UBM7 475 aaKnown RBP7.9□□□□□ -1.14
USP40-203ENST00000427112 OR5V1Q9UGF6 321 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 KCNG2Q9UJ96 466 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 OBSL1O75147 1896 aa7.9□□□□□ -1.14
USP40-203ENST00000427112 ESPL1Q14674 2120 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 A0A1B0GV50 99 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 TGFBR3LH3BV60 316 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 CD3DP04234 171 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 DBIP07108 87 aaKnown RBP7.9□□□□□ -1.15
USP40-203ENST00000427112 SLC2A1P11166 492 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 CBFBQ13951 182 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 TSC22D1Q15714 1073 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 LRFN4Q6PJG9 635 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 UNQ6126/PRO20091Q6UXV3 157 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 CD300LDQ6UXZ3 194 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 COMMD2Q86X83 199 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 RGP1Q92546 391 aaPredicted RBP7.9□□□□□ -1.15
USP40-203ENST00000427112 SLC25A38Q96DW6 304 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 MYADMQ96S97 322 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 PARP12Q9H0J9 701 aaKnown RBP7.9□□□□□ -1.15
USP40-203ENST00000427112 PCDHB16Q9NRJ7 776 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 NUBP2Q9Y5Y2 271 aa7.9□□□□□ -1.15
USP40-203ENST00000427112 GPR179Q6PRD1 2367 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 C13orf42A0A1B0GVH6 325 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 CDK2AP1O14519 115 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 HCRTR2O43614 444 aa7.89□□□□□ -1.15
USP40-203ENST00000427112 WNT11O96014 354 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms