RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MTNR1AP48039 350 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 ALDH3B2P48448 385 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 CLDN15P56746 228 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 RPL27P61353 136 aaKnown RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 EMX1Q04741 257 aaPredicted RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 PAQR6Q6TCH4 344 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 B3GLCTQ6Y288 498 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 TRILQ7L0X0 811 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 MEPCEQ7L2J0 689 aaKnown RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 FAM109AQ8N4B1 249 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 STX19Q8N4C7 294 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 ARIH2OSQ8N7S6 290 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 TM9SF4Q92544 642 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 KISS1RQ969F8 398 aaPredicted RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 LGALS12Q96DT0 336 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 MFRPQ9BY79 579 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 SRXN1Q9BYN0 137 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 NMNAT2Q9BZQ4 307 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 OR51V1Q9H2C8 321 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 PCDHGB1Q9Y5G3 927 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 ZNF407Q9C0G0 2248 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 AQP7P3A6NL99 342 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 LINC01387J3KSC0 135 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 EIF1AYO14602 144 aaKnown RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 APOL3O95236 402 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 MAP2K4P45985 399 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 POU3F1Q03052 451 aaPredicted RBP16.66■□□□□ 0.26
CLN3-206ENST00000360019 MELKQ14680 651 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 NEDD8Q15843 81 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 NADK2Q4G0N4 442 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 KLHL12Q53G59 568 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 BORAQ6PGQ7 559 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 NHLRC1Q6VVB1 395 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 ESPNLQ6ZVH7 1005 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 PXKQ7Z7A4 578 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 SATL1Q86VE3 508 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 JAZF1Q86VZ6 243 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 UBQLNLQ8IYU4 475 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 ZADH2Q8N4Q0 377 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 LIPGQ9Y5X9 500 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 COMMD3-BMI1R4GMX3 469 aa16.66■□□□□ 0.26
CLN3-206ENST00000360019 A0A1W2PRG6 482 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 H7C1C5 153 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 K7EM74 188 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 ACOT7O00154 380 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 FADS2O95864 444 aaKnown RBP16.65■□□□□ 0.26
CLN3-206ENST00000360019 ITGB2P05107 769 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 LHX2P50458 406 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 LCN6P62502 163 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 HSF1Q00613 529 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 ARMC4Q5T2S8 1044 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 GTF2IRD2BQ6EKJ0 949 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 GTF2IRD2Q86UP8 949 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 WDFY1Q8IWB7 410 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 OR52I1Q8NGK6 324 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 ZDHHC11Q9H8X9 412 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 ACKR4Q9NPB9 350 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 TAS2R16Q9NYV7 291 aa16.65■□□□□ 0.26
CLN3-206ENST00000360019 IGHV3-15A0A0B4J1V0 119 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 A6NHS1 94 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 NPIPB13A6NJU9 1138 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 NPIPB4C9JG80 1138 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 IFNGR1P15260 489 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 ACVR1BP36896 505 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 CSNK2A1P68400 391 aaPredicted RBP16.64■□□□□ 0.25
CLN3-206ENST00000360019 RAB40BQ12829 278 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 SLC10A1Q14973 349 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 SHFQ7M4L6 423 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 ZNRF4Q8WWF5 429 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 TMIGD2Q96BF3 282 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 TMEM80Q96HE8 168 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 TEAD3Q99594 435 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 RPRD1BQ9NQG5 326 aaKnown RBP16.64■□□□□ 0.25
CLN3-206ENST00000360019 ASB6Q9NWX5 421 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 MED29Q9NX70 200 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 DNAJC13O75165 2243 aa16.64■□□□□ 0.25
CLN3-206ENST00000360019 SLC22A31A6NKX4 558 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 ARHGEF9O43307 516 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 EIF1BO60739 113 aaKnown RBP16.63■□□□□ 0.25
CLN3-206ENST00000360019 RAC3P60763 192 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 RUNX1T1Q06455 604 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 IRF3Q14653 427 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 HBMQ6B0K9 141 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 B3GNT6Q6ZMB0 384 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 SLC35D2Q76EJ3 337 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 GPAT4Q86UL3 456 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 EXD3Q8N9H8 876 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 OR4F15Q8NGB8 312 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 OR10D3Q8NH80 312 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 OR2V1Q8NHB1 315 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 FAR1Q8WVX9 515 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 ASB10Q8WXI3 467 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 TXNDC15Q96J42 360 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 TSSK2Q96PF2 358 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 UCN2Q96RP3 112 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 DEFB127Q9H1M4 99 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 ACOT13Q9NPJ3 140 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 WARS2Q9UGM6 360 aaKnown RBP16.63■□□□□ 0.25
CLN3-206ENST00000360019 C1QTNF9BB2RNN3 333 aa16.63■□□□□ 0.25
CLN3-206ENST00000360019 NPIPA5E9PKD4 350 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms