RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MRPL48Q96GC5 212 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 MESP1Q9BRJ9 268 aa16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 LAT2Q9GZY6 243 aa16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 AUNIPQ9H7T9 357 aa16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 MRTO4Q9UKD2 239 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 IKZF2Q9UKS7 526 aa16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 SPATA2Q9UM82 520 aa16.66■□□□□ 0.26
SHKBP1-201ENST00000291842 IGHV3-20A0A0C4DH32 117 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 TCRBV16S1A1N1A0A5B0 115 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 FAM47E-STBD1D6RA91 191 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 UBL3O95164 117 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 CCR6P51684 374 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 C6orf183Q5T699 404 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 DPY19L4Q7Z388 723 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 KANSL1Q7Z3B3 1105 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 TIGD4Q8IY51 512 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 PM20D2Q8IYS1 436 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 CMTM4Q8IZR5 234 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 TCTE3Q8IZS6 198 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 OR6N2Q8NGY6 317 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 C1orf216Q8TAB5 229 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 TBL1XR1Q9BZK7 514 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 ADAM19Q9H013 955 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 RAB33BQ9H082 229 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 MRPL15Q9P015 296 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 FRRS1LQ9P0K9 344 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 GPRIN2O60269 458 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 AKR7A3O95154 331 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 GIFP27352 417 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 SLC25A1P53007 311 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 HSF2Q03933 536 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 C16orf47Q6ZP98 133 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 HAVCR2Q8TDQ0 301 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 AKAP1Q92667 903 aaKnown RBP eCLIP16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 CCNL2Q96S94 520 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 VN1R1Q9GZP7 353 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 CHRNA10Q9GZZ6 450 aa16.65■□□□□ 0.26
SHKBP1-201ENST00000291842 UPK3AO75631 287 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 MT-ND4P03905 459 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 ANKRD34CP0C6C1 535 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 PRKCAP17252 672 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 EPHA4P54764 986 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 CHRDL2Q6WN34 429 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 FAM220AQ7Z4H9 259 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC25A45Q8N413 288 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 THEM6Q8WUY1 208 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 OMA1Q96E52 524 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 MAP6Q96JE9 813 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 WWTR1Q9GZV5 400 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 UBE2ZQ9H832 354 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 FKRPQ9H9S5 495 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 ING3Q9NXR8 418 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 CTSFQ9UBX1 484 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 LAMP5Q9UJQ1 280 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 PCDHGA9Q9Y5G4 932 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 FER1L5A0AVI2 2057 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 ABCD3P28288 659 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 MMP15P51511 669 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 FAPQ12884 760 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 LRRC69Q6ZNQ3 347 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 FCRLAQ7L513 359 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 PLXDC1Q8IUK5 500 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC6A5Q9Y345 797 aa16.64■□□□□ 0.25
SHKBP1-201ENST00000291842 IFITM5A6NNB3 132 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 DUX1O43812 170 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 TSPAN2O60636 221 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 CD1AP06126 327 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 APEHP13798 732 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 CENPAP49450 140 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 YIF1BQ5BJH7 314 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 OR5M10Q6IEU7 315 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 CDC20BQ86Y33 519 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 DNAAF1Q8NEP3 725 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 OR5AK2Q8NH90 309 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 NUDT22Q9BRQ3 303 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 ULBP3Q9BZM4 244 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 TAS2R5Q9NYW4 299 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 MOKQ9UQ07 419 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 TXNDC12O95881 172 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 IGF2P01344 180 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 TCRBP04435 133 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 TACSTD2P09758 323 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 SNRPD2P62316 118 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 PITPNAQ00169 270 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 NDUFA5Q16718 116 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 UBE2NLQ5JXB2 153 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 BICRALQ6AI39 1079 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 FAM199XQ6PEV8 388 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 LINGO2Q7L985 606 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 D2HGDHQ8N465 521 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 OR2T4Q8NH00 348 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 OR10AC1Q8NH08 325 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 RPS4Y2Q8TD47 263 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 DAZLQ92904 295 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 MVB12AQ96EY5 273 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 AMELYQ99218 206 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 DPAGT1Q9H3H5 408 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 LIN7BQ9HAP6 207 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 COPS7AQ9UBW8 275 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms