RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GAREM1Q9H706 876 aa14.81□□□□□ -0.04
COL4A1-204ENST00000543140 EXTL2Q9UBQ6 330 aa14.81□□□□□ -0.04
COL4A1-204ENST00000543140 RARRES3Q9UL19 164 aa14.81□□□□□ -0.04
COL4A1-204ENST00000543140 KLHDC2Q9Y2U9 406 aa14.81□□□□□ -0.04
COL4A1-204ENST00000543140 WDFY3Q8IZQ1 3526 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 A0A087WV48 116 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 TMEM72A0PK05 275 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 PLA2G10O15496 165 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 ARHGEF9O43307 516 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 SUSD5O60279 629 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 RPP14O95059 124 aaKnown RBP14.8□□□□□ -0.04
COL4A1-204ENST00000543140 GPANK1O95872 356 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 BGLAPP02818 100 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 THBS2P35442 1172 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 RPS27P42677 84 aaKnown RBP14.8□□□□□ -0.04
COL4A1-204ENST00000543140 ASAH1Q13510 395 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 FAM69BQ5VUD6 431 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 OR6V1Q8N148 313 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 EXD3Q8N9H8 876 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 PMEPA1Q969W9 287 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 CTRCQ99895 268 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 SYT4Q9H2B2 425 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 FKRPQ9H9S5 495 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 TAS2R5Q9NYW4 299 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 NPFFR2Q9Y5X5 522 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 TRAV36DV7A0A075B6V5 113 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 TMED7-TICAM2A0A0A6YYA0 188 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 A0A0G2JK05 382 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 A0A0G2JMP0 313 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 A0A0X1KG70 313 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 EIF4EP06730 217 aaKnown RBP14.8□□□□□ -0.04
COL4A1-204ENST00000543140 APEHP13798 732 aaKnown RBP14.8□□□□□ -0.04
COL4A1-204ENST00000543140 PNLIPP16233 465 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 CASP3P42574 277 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 MAGEB1P43366 347 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 CAPZA2P47755 286 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 P2RX1P51575 399 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 RPS11P62280 158 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL4A1-204ENST00000543140 IL10RAQ13651 578 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 TRIQKQ629K1 86 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 LCN10Q6JVE6 187 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 RPL22L1Q6P5R6 122 aaKnown RBP14.8□□□□□ -0.04
COL4A1-204ENST00000543140 C7orf57Q8NEG2 295 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 OR4M2Q8NGB6 313 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 OR4D9Q8NGE8 314 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 GPR119Q8TDV5 335 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 ACOT12Q8WYK0 555 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 C8orf44Q96CB5 159 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 ITPKCQ96DU7 683 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 SLC22A4Q9H015 551 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 C12orf10Q9HB07 376 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 CLEC4AQ9UMR7 237 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 SLC6A5Q9Y345 797 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 TMED7Q9Y3B3 224 aa14.8□□□□□ -0.04
COL4A1-204ENST00000543140 A0A0B4J203 849 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 ALOX12BO75342 701 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 SLC25A1P53007 311 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 COL28A1Q2UY09 1125 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 PHF19Q5T6S3 580 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 ZNF517Q6ZMY9 492 aaPredicted RBP14.79□□□□□ -0.04
COL4A1-204ENST00000543140 TPRA1Q86W33 373 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 ADGRG3Q86Y34 549 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 PM20D2Q8IYS1 436 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 METTL21AQ8WXB1 218 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 HSD17B8Q92506 261 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 FOXN4Q96NZ1 517 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 NPAS1Q99742 590 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 AKIRIN1Q9H9L7 192 aaPredicted RBP14.79□□□□□ -0.04
COL4A1-204ENST00000543140 GALNT9Q9HCQ5 603 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 ADAM30Q9UKF2 790 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 IGLV3-12A0A075B6K2 115 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 OR6C70A6NIJ9 312 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 PATE3B3GLJ2 98 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 SLC19A2O60779 497 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 OR8G3PP0DMU2 310 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 RAB3BP20337 219 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 NANOS3P60323 173 aaKnown RBP14.79□□□□□ -0.04
COL4A1-204ENST00000543140 DCDP81605 110 aaKnown RBP14.79□□□□□ -0.04
COL4A1-204ENST00000543140 RAB43Q86YS6 212 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 C19orf18Q8NEA5 215 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 NFAM1Q8NET5 270 aaPredicted RBP14.79□□□□□ -0.04
COL4A1-204ENST00000543140 ADAD1Q96M93 576 aaKnown RBP14.79□□□□□ -0.04
COL4A1-204ENST00000543140 PTDSS2Q9BVG9 487 aa14.79□□□□□ -0.04
COL4A1-204ENST00000543140 TNRC6BQ9UPQ9 1833 aaKnown RBP14.78□□□□□ -0.04
COL4A1-204ENST00000543140 EXPH5Q8NEV8 1989 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 ANKRD34CP0C6C1 535 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 POLR2HP52434 150 aaKnown RBP14.78□□□□□ -0.04
COL4A1-204ENST00000543140 AGAP6Q5VW22 663 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 PAPD4Q6PIY7 484 aaKnown RBP14.78□□□□□ -0.04
COL4A1-204ENST00000543140 METAP1DQ6UB28 335 aaPredicted RBP14.78□□□□□ -0.04
COL4A1-204ENST00000543140 OR4M1Q8NGD0 313 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 EDAQ92838 391 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 AGAP4Q96P64 663 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 WDR76Q9H967 626 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 OCIAD1Q9NX40 245 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 TAS2R10Q9NYW0 307 aa14.78□□□□□ -0.04
COL4A1-204ENST00000543140 ING1Q9UK53 422 aaPredicted RBP14.78□□□□□ -0.04
COL4A1-204ENST00000543140 TRBV11-1A0A0K0K1C0 115 aa14.77□□□□□ -0.04
COL4A1-204ENST00000543140 TXNDC12O95881 172 aa14.77□□□□□ -0.04
COL4A1-204ENST00000543140 SERPINA3P01011 423 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms