RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TMEM200CA6NKL6 621 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC25A12O75746 678 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 HOXB1P14653 301 aaPredicted RBP11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 HIST1H1CP16403 213 aaKnown RBP11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 RFC3P40938 356 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 CENPAP49450 140 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 ARFIP1P53367 373 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SREBF2Q12772 1141 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 IL10RAQ13651 578 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 PAN3Q58A45 887 aaKnown RBP11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 MRM1Q6IN84 353 aaKnown RBP11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 NDUFAF7Q7L592 441 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 NRSN1Q8IZ57 195 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 ZSCAN1Q8NBB4 408 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 OR14A16Q8NHC5 309 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 MS4A4EQ96PG1 132 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 COA4Q9NYJ1 87 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 PEX12O00623 359 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 ZFPL1O95159 310 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 FABP1P07148 127 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 C6P13671 934 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SELPP16109 830 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 DUSP5Q16690 384 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 TMEM35AQ53FP2 167 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 LY6G5CQ5SRR4 150 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 GLT8D1Q68CQ7 371 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 MFSD12Q6NUT3 480 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 TMEM71Q6P5X7 295 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 STAC2Q6ZMT1 411 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC36A1Q7Z2H8 476 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 LURAP1LQ8IV03 231 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 ZNF676Q8N7Q3 588 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 OR7G2Q8NG99 324 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 TCEAL3Q969E4 200 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 VN1R3Q9BXE9 311 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 NIT2Q9NQR4 276 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 C14orf105Q9NVL8 296 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 ALPK2Q86TB3 2170 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SCN2AQ99250 2005 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 TMEM82A0PJX8 343 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 WASH3PC4AMC7 463 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 LILRB5O75023 590 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 GLSO94925 669 aaPredicted RBP11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 AMY2AP04746 511 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 OR8G3PP0DMU2 310 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 CALCBP10092 127 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SYN1P17600 705 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 CD34P28906 385 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 PRSS3P35030 304 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 BCL6P41182 706 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 ZNF136P52737 540 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 PPIAP62937 165 aaKnown RBP11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 POMGNT2Q8NAT1 580 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 OR5K2Q8NHB8 316 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 GFI1Q99684 422 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 SLC23A2Q9UGH3 650 aa11.78□□□□□ -0.52
SFSWAP-209ENST00000540469 TMEM272A0A1B0GTI8 110 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 C17orf113A0A1B0GUU1 675 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 H7C417 338 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 LATO43561 262 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 PRICKLE3O43900 615 aaPredicted RBP11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 SNAPINO95295 136 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 AGR2O95994 175 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 CRYBA1P05813 215 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 HSD17B2P37059 387 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 NOGQ13253 232 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 GXYLT1Q4G148 440 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 STEAP1BQ6NZ63 245 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 C17orf99Q6UX52 265 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 OR51D1Q8NGF3 324 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 OR6N1Q8NGY5 312 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 ZNF764Q96H86 408 aaPredicted RBP11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 NMNAT3Q96T66 252 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 PTDSS2Q9BVG9 487 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 MYEF2Q9P2K5 600 aaKnown RBP11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 MTFP1Q9UDX5 166 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 FBXO4Q9UKT5 387 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 PCOLCE2Q9UKZ9 415 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 KCNK7Q9Y2U2 307 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 ADAM18Q9Y3Q7 739 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 CDH23Q9H251 3354 aa11.77□□□□□ -0.52
SFSWAP-209ENST00000540469 ADAM11O75078 769 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 OLFM2O95897 454 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 PCCBP05166 539 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 OR4E1P0C645 316 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 RAB5BP61020 215 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 STPG1Q5TH74 334 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ABHD17CQ6PCB6 329 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ZNF627Q7L945 461 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 FAM122BQ7Z309 247 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 DEFB128Q7Z7B8 93 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 ADIPOR2Q86V24 386 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 DND1Q8IYX4 353 aaKnown RBP11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 OR1J4Q8NGS1 313 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 OR5AK2Q8NH90 309 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 TRIM43Q96BQ3 446 aaPredicted RBP11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 MS4A6EQ96DS6 147 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 FBXO17Q96EF6 278 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 PTCHD1Q96NR3 888 aa11.77□□□□□ -0.53
SFSWAP-209ENST00000540469 CNTNAP3BQ96NU0 1288 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms