RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 C1DQ13901 141 aaKnown RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 ANKDD1AQ495B1 522 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 DNAL1Q4LDG9 190 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 BEX5Q5H9J7 111 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 TIMM23BQ5SRD1 257 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 OR7E24Q6IFN5 339 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 NANOGNBQ7Z5D8 188 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 EPHX4Q8IUS5 362 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 RNF113BQ8IZP6 322 aaKnown RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 UBE2J2Q8N2K1 259 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 C10orf53Q8N6V4 93 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 RNF148Q8N7C7 305 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ZNF433Q8N7K0 673 aaPredicted RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 ZIC4Q8N9L1 334 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 HSD17B8Q92506 261 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ZNF775Q96BV0 537 aaPredicted RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 BOD1Q96IK1 185 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 WFIKKN1Q96NZ8 548 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ZNF385AQ96PM9 386 aaKnown RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 FNDC11Q9BVV2 318 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 CLEC4MQ9H2X3 399 aaPredicted RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 NGBQ9NPG2 151 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 MEPEQ9NQ76 525 aaPredicted RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 ACTR3BQ9P1U1 418 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 UPB1Q9UBR1 384 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 EDARQ9UNE0 448 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ENPP4Q9Y6X5 453 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 CADP27708 2225 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 CREBBPQ92793 2442 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 A0A1W2PRQ8 180 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 NPIPB13A6NJU9 1138 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 NPIPB4C9JG80 1138 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 ZNF587BE7ETH6 402 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 KPNA4O00629 521 aaPredicted RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 PLPP3O14495 311 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 SLC43A1O75387 559 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 ZNF432O94892 652 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 PRSS23O95084 383 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 OR6A2O95222 327 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 CH25HO95992 272 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 HRGP04196 525 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 HIST1H2ABP04908 130 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 T-ENOLP0DO92 83 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 TCN1P20061 433 aaPredicted RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 IGHV1-2P23083 117 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 EDNRAP25101 427 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 MPGP29372 298 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 NTF4P34130 210 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 POU3F1Q03052 451 aaPredicted RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 LTBQ06643 244 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 DGCR6Q14129 220 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 STK11Q15831 433 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 LCN8Q6JVE9 175 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 HIST3H2AQ7L7L0 130 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 SLC46A3Q7Z3Q1 461 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 HDDC2Q7Z4H3 204 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 P3H2Q8IVL5 708 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 NKAIN4Q8IVV8 208 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 FAM156AQ8NDB6 213 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 PIK3C3Q8NEB9 887 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 TMEM255BQ8WV15 326 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 ACOT11Q8WXI4 607 aaPredicted RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 HIST1H2ACQ93077 130 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 S100PBPQ96BU1 408 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 SGTBQ96EQ0 304 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 PYURFQ96I23 114 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 DHRS1Q96LJ7 313 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 ADAD1Q96M93 576 aaKnown RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 POLDIP3Q9BY77 421 aaKnown RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 MOV10Q9HCE1 1003 aaKnown RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 MAN2C1Q9NTJ4 1040 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 STX18Q9P2W9 335 aaKnown RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 SEC14L4Q9UDX3 406 aa10.46□□□□□ -0.73
VPS52-213ENST00000461743 FAM32AQ9Y421 112 aaKnown RBP10.46□□□□□ -0.73
VPS52-213ENST00000461743 ROS1P08922 2347 aa10.46□□□□□ -0.74
VPS52-213ENST00000461743 OR5H1A6NKK0 313 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 CYSRT1A8MQ03 144 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 DEFB108AA8MXU0 73 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 MS4A18H0YCH9 400 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 RPL36A-HNRNPH2H7BZ11 118 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 FFAR1O14842 300 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 AHCYL1O43865 530 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 LYZL6O75951 148 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 OR7A10O76100 309 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 UBOX5O94941 541 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 THBDP07204 575 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 ITGA5P08648 1049 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 TSPAN19P0C672 248 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 ADORA3P0DMS8 318 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 UMPSP11172 480 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 HOXB6P17509 224 aaKnown RBP10.45□□□□□ -0.74
VPS52-213ENST00000461743 DNAJA1P31689 397 aaKnown RBP10.45□□□□□ -0.74
VPS52-213ENST00000461743 SLC9A3P48764 834 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 SELENOPP49908 381 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 CLDN17P56750 224 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 SMIM11AP58511 58 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 IL1RL1Q01638 556 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 FAPQ12884 760 aa10.45□□□□□ -0.74
VPS52-213ENST00000461743 TRIM25Q14258 630 aaKnown RBP10.45□□□□□ -0.74
VPS52-213ENST00000461743 MS4A18Q3C1V0 323 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms