RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 AGAP5A6NIR3 686 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 SMIM23A6NLE4 172 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 RNASET2O00584 256 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 GKN3PP0CG01 181 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 KRT4P19013 534 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 UQCRC2P22695 453 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 NR4A1P22736 598 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 SH3BGRP55822 239 aaPredicted RBP17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 CLDN17P56750 224 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 WHAMMP3Q1A5X7 153 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 ZNF311Q5JNZ3 666 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 SAXO2Q658L1 398 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 SHISA2Q6UWI4 295 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 CADM2Q8N3J6 435 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 KIF18AQ8NI77 898 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 MS4A3Q96HJ5 214 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 SUCNR1Q9BXA5 334 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 SLC38A1Q9H2H9 487 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 MS4A5Q9H3V2 200 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 GPR35Q9HC97 309 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 RLIMQ9NVW2 624 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 MYEF2Q9P2K5 600 aaKnown RBP17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 FZR1Q9UM11 496 aa17.45■□□□□ 0.38
SQSTM1-215ENST00000514093 HMGN4O00479 90 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 FAAHO00519 579 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 FRS3O43559 492 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 NPHS1O60500 1241 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 VAMP5O95183 116 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 SHBGP04278 402 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 UQCRBP14927 111 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 CHI3L1P36222 383 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 TMEM33P57088 247 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 MYBPC1Q00872 1141 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 POU3F1Q03052 451 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 CEACAM16Q2WEN9 425 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 MRPL2Q5T653 305 aaKnown RBP17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 CMIPQ8IY22 773 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 RIBC1Q8N443 379 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 C22orf15Q8WYQ4 148 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 TMPRSS13Q9BYE2 586 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 MARCOQ9UEW3 520 aaPredicted RBP17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 ZDHHC2Q9UIJ5 367 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 MID2Q9UJV3 735 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 RASD1Q9Y272 281 aa17.44■□□□□ 0.38
SQSTM1-215ENST00000514093 A8MVM7 634 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 RPL36A-HNRNPH2H7BZ11 118 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 NCR1O76036 304 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 BCL10O95999 233 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 NAT2P11245 290 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 IL7RP16871 459 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 ARRB2P32121 409 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 EVX1P49640 407 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 UBA52P62987 128 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 C1orf140Q5VVS0 124 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 IL17RDQ8NFM7 739 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 SLC25A36Q96CQ1 311 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 NEURL3Q96EH8 262 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 TXLNGYQ9BZA5 131 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 SEC14L4Q9UDX3 406 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 PPIAL4AQ9Y536 164 aa17.43■□□□□ 0.38
SQSTM1-215ENST00000514093 ZNF432O94892 652 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 MPZL1O95297 269 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 HLA-HP01893 362 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 ARAFP10398 606 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 PIGFQ07326 219 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 GSTA3Q16772 222 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 ALKBH6Q3KRA9 238 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 AVPI1Q5T686 147 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 TREML4Q6UXN2 200 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 C1QL2Q7Z5L3 287 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 RNF130Q86XS8 419 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 CNPY4Q8N129 248 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 BPIFB2Q8N4F0 458 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 SLC35A5Q9BS91 424 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 C1QTNF5Q9BXJ0 243 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 DPY30Q9C005 99 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 ZNF665Q9H7R5 613 aa17.42■□□□□ 0.38
SQSTM1-215ENST00000514093 PRSS51A0A1B0GVH4 220 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 PLPP2O43688 288 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 CDC14BO60729 498 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 SLC43A1O75387 559 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 GSNP06396 782 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 TFPTP0C1Z6 253 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 CD79AP11912 226 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 ZNF43P17038 809 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 ACAA2P42765 397 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 MVKQ03426 396 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 EMX2Q04743 252 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 MIDNQ504T8 468 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 ACSM5Q6NUN0 579 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 HOMEZQ8IX15 550 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 GPR137CQ8N3F9 429 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 TEX29Q8N6K0 151 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 OR8J2Q8NGG1 315 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 PPP1R36Q96LQ0 422 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 TRNT1Q96Q11 434 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 SLC52A3Q9NQ40 469 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 B3GNT2Q9NY97 397 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 DUSP13Q9UII6 198 aa17.41■□□□□ 0.38
SQSTM1-215ENST00000514093 NOX1Q9Y5S8 564 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms