RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GUSBP1Q15486 140 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 HSPB2Q16082 182 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 TMPRSS11FQ6ZWK6 438 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 HIST3H2AQ7L7L0 130 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 CCDC71Q8IV32 467 aaPredicted RBP26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 CNEP1R1Q8N9A8 125 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 OR13C2Q8NGS9 318 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 HIST1H2ACQ93077 130 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 NTN4Q9HB63 628 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 GLRX2Q9NS18 164 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 RNF6Q9Y252 685 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 RASD1Q9Y272 281 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 A0A1W2PNV4 684 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 PLPP3O14495 311 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 AGTR1P30556 359 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 IFNGR2P38484 337 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 SLC16A1P53985 500 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 PUDPQ08623 228 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 SLC17A1Q14916 467 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 MICAQ29983 383 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 PGBD2Q6P3X8 592 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 ZER1Q7Z7L7 766 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 KDM8Q8N371 416 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 LINC00471Q8N535 108 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 BCO1Q9HAY6 547 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 S100A14Q9HCY8 104 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 B3GAT1Q9P2W7 334 aa26.37■■□□□ 1.81
LIMCH1-211ENST00000509638 IGKV3D-15A0A087WSY6 115 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 ZG16O60844 167 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 VAMP5O95183 116 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 ADORA3P0DMS8 318 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 ZNF770Q6IQ21 691 aaPredicted RBP26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 AMIGO2Q86SJ2 522 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 TUSC5Q8IXB3 177 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 OR9K2Q8NGE7 335 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 SFXN3Q9BWM7 321 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 GP6Q9HCN6 339 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 EMC3Q9P0I2 261 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 DOPEY1Q5JWR5 2465 aa26.36■■□□□ 1.81
LIMCH1-211ENST00000509638 TRAV27A0A087WT01 109 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 TNFSF13O75888 250 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 HPRP00739 348 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 CRHP06850 196 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 CTSSP25774 331 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 PDK3Q15120 406 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 HMBOX1Q6NT76 420 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 FAM214BQ7L5A3 538 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 OAFQ86UD1 273 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 AQP11Q8NBQ7 271 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 OR10G2Q8NGC3 310 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 GPA33Q99795 319 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 BDH2Q9BUT1 245 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 SF3B5Q9BWJ5 86 aaKnown RBP26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 EMC9Q9Y3B6 208 aa26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 FASNP49327 2511 aaKnown RBP26.35■■□□□ 1.81
LIMCH1-211ENST00000509638 BLOC1S5-TXNDC5H3BN57 136 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 KLF4O43474 513 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 OR6A2O95222 327 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 SLC9A3P48764 834 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 RPS4XP62701 263 aaKnown RBP26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 TMEM201Q5SNT2 666 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 HS3ST5Q8IZT8 346 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 ZNF775Q96BV0 537 aaPredicted RBP26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 SDCCAG3Q96C92 435 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 COQ3Q9NZJ6 369 aa26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 SPTBN1Q01082 2364 aaKnown RBP26.34■■□□□ 1.81
LIMCH1-211ENST00000509638 ZNF724A8MTY0 619 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 C11orf98E9PRG8 122 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 MS4A18H0YCH9 400 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 AGFG2O95081 481 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 YES1P07947 543 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 BMP5P22003 454 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 AHCYP23526 432 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 FPR3P25089 353 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 UQCRC1P31930 480 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 KIR2DL2P43627 348 aaPredicted RBP26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 SMSP52788 366 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 RPL18Q07020 188 aaKnown RBP26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 POU4F3Q15319 338 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 MS4A18Q3C1V0 323 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 C1orf94Q6P1W5 598 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 VWA1Q6PCB0 445 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 OR51A7Q8NH64 312 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 GIPC3Q8TF64 312 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 PKP2Q99959 881 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 TACO1Q9BSH4 297 aaKnown RBP26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 SEMA6AQ9H2E6 1030 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 TAS2R5Q9NYW4 299 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 PDP1Q9P0J1 537 aaPredicted RBP26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 HIF3AQ9Y2N7 669 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 FLVCR1Q9Y5Y0 555 aa26.33■■□□□ 1.81
LIMCH1-211ENST00000509638 ARRDC5A6NEK1 342 aa26.33■■□□□ 1.8
LIMCH1-211ENST00000509638 CHRNB4P30926 498 aa26.33■■□□□ 1.8
LIMCH1-211ENST00000509638 POU3F1Q03052 451 aaPredicted RBP26.33■■□□□ 1.8
LIMCH1-211ENST00000509638 SHQ1Q6PI26 577 aaKnown RBP26.33■■□□□ 1.8
LIMCH1-211ENST00000509638 OXGR1Q96P68 337 aa26.33■■□□□ 1.8
LIMCH1-211ENST00000509638 COL12A1Q99715 3063 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 GPR171O14626 319 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 RNF13O43567 381 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 SERPINI2O75830 405 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms