RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TRPM8Q7Z2W7 1104 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 ABHD12BQ7Z5M8 362 aaPredicted RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 VTCN1Q7Z7D3 282 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 GPAT4Q86UL3 456 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 TSPYL5Q86VY4 417 aaPredicted RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 POMGNT2Q8NAT1 580 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 ZNF417Q8TAU3 575 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 KISS1RQ969F8 398 aaPredicted RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 POP5Q969H6 163 aaKnown RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 SLC25A36Q96CQ1 311 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 DNAJA3Q96EY1 480 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 HS6ST2Q96MM7 605 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 OXGR1Q96P68 337 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 ZNF587Q96SQ5 575 aaPredicted RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 MED18Q9BUE0 208 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 ANKRD19PQ9H560 264 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 HEATR1Q9H583 2144 aaKnown RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 DCAF13Q9NV06 445 aaKnown RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 GMPR2Q9P2T1 348 aaKnown RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 ZNF229Q9UJW7 825 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 PRPF19Q9UMS4 504 aaKnown RBP10.5□□□□□ -0.73
VPS52-213ENST00000461743 SNX13Q9Y5W8 968 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 AKAP6Q13023 2319 aa10.5□□□□□ -0.73
VPS52-213ENST00000461743 PLCE1Q9P212 2302 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 B2RBV5 119 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 CASKO14936 926 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ARPC2O15144 300 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 CTAG2O75638 210 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 MT-ND1P03886 318 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ZNF43P17038 809 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 IL32P24001 234 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 OR1E2P47887 323 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 PUDPQ08623 228 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ZNF74Q16587 644 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 WDR88Q6ZMY6 472 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 CREB3L2Q70SY1 520 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 P2RY8Q86VZ1 359 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 CYP4Z1Q86W10 505 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 CXorf67Q86X51 503 aaPredicted RBP10.49□□□□□ -0.73
VPS52-213ENST00000461743 RBM15BQ8NDT2 890 aaKnown RBP10.49□□□□□ -0.73
VPS52-213ENST00000461743 C1orf162Q8NEQ5 155 aaPredicted RBP10.49□□□□□ -0.73
VPS52-213ENST00000461743 OR5J2Q8NH18 312 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 LINC01560Q8TB33 94 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 CDRT15Q96T59 188 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 SH3GL3Q99963 347 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 PRSS27Q9BQR3 290 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ACTR6Q9GZN1 396 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 SLCO5A1Q9H2Y9 848 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ASB6Q9NWX5 421 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 TAS2R16Q9NYV7 291 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 B3GAT1Q9P2W7 334 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 EGFL7Q9UHF1 273 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 RIMS3Q9UJD0 308 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 A4GNTQ9UNA3 340 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 NOX1Q9Y5S8 564 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 AKAP9Q99996 3911 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ALPK2Q86TB3 2170 aa10.49□□□□□ -0.73
VPS52-213ENST00000461743 ADAP00813 363 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 NQO1P15559 274 aaKnown RBP10.48□□□□□ -0.73
VPS52-213ENST00000461743 NCK1P16333 377 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 TNFRSF1BP20333 461 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 PIN1Q13526 163 aaPredicted RBP10.48□□□□□ -0.73
VPS52-213ENST00000461743 TRAM2Q15035 370 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 FKBP9P1Q75LS8 142 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 BHLHA15Q7RTS1 189 aaPredicted RBP10.48□□□□□ -0.73
VPS52-213ENST00000461743 AAED1Q7RTV5 226 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 PXKQ7Z7A4 578 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 TMEM200AQ86VY9 491 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 EGFL6Q8IUX8 553 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 UEVLDQ8IX04 471 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 C17orf78Q8N4C9 275 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 ANKK1Q8NFD2 765 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 TMEM239Q8WW34 195 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 LIPHQ8WWY8 451 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 LURAP1Q96LR2 239 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 NSMCE2Q96MF7 247 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 MOGAT1Q96PD6 335 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 LINC00470Q9BZP3 86 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 AMBRA1Q9C0C7 1298 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 NANSQ9NR45 359 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 RASSF1Q9NS23 344 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 PRSS50Q9UI38 385 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 MED31Q9Y3C7 131 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 MYO9AB2RTY4 2548 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 DSCAMO60469 2012 aa10.48□□□□□ -0.73
VPS52-213ENST00000461743 CCDC168Q8NDH2 2452 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ENO4A6NNW6 628 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 PDLIM1O00151 329 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 TRAF3IP2O43734 574 aaPredicted RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 SEMG1P04279 462 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ASAH2BP0C7U1 165 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ITGA2P17301 1181 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 RHCEP18577 417 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 UGT2B15P54855 530 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 NR1H2P55055 460 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 SH3BGRP55822 239 aaPredicted RBP10.47□□□□□ -0.73
VPS52-213ENST00000461743 TGFBR3Q03167 851 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 ZP4Q12836 540 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 PMS2P3Q13401 168 aa10.47□□□□□ -0.73
VPS52-213ENST00000461743 SNTB1Q13884 538 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms