RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SIKE1Q9BRV8 207 aa15.52■□□□□ 0.08
HDDC3-201ENST00000330334 C1QTNF6Q9BXI9 259 aa15.52■□□□□ 0.08
HDDC3-201ENST00000330334 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.52■□□□□ 0.08
HDDC3-201ENST00000330334 TESQ9UGI8 421 aaKnown RBP15.52■□□□□ 0.08
HDDC3-201ENST00000330334 LEF1Q9UJU2 399 aaPredicted RBP15.52■□□□□ 0.08
HDDC3-201ENST00000330334 TRIM33Q9UPN9 1127 aa15.52■□□□□ 0.08
HDDC3-201ENST00000330334 TRAV36DV7A0A075B6V5 113 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 RNF223E7ERA6 249 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 AIM2O14862 343 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 TPST1O60507 370 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 NDUFS7O75251 213 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 BMP4P12644 408 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 GTF2E2P29084 291 aaKnown RBP15.51■□□□□ 0.07
HDDC3-201ENST00000330334 APOBEC3AP31941 199 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-201ENST00000330334 FABP6P51161 128 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 DSCR9P59020 149 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 RBBP4Q09028 425 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 ALG10BQ5I7T1 473 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 METTL21CQ5VZV1 264 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 B3GLCTQ6Y288 498 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 H1FNTQ75WM6 255 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-201ENST00000330334 ADPRHL1Q8NDY3 354 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 OR1K1Q8NGR3 316 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 BCL2L2Q92843 193 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-201ENST00000330334 CPPED1Q9BRF8 314 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-201ENST00000330334 ZNF385DQ9H6B1 395 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 TMEM27Q9HBJ8 222 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 B3GAT1Q9P2W7 334 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 GDF2Q9UK05 429 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-201ENST00000330334 NDUFAF1Q9Y375 327 aa15.51■□□□□ 0.07
HDDC3-201ENST00000330334 IGKV1D-42A0A075B6H8 117 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 A0A087WUJ7 227 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ARPC4-TTLL3A0A0A6YYG9 625 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 H7C417 338 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 MFN2O95140 757 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 PCBP3P57721 371 aaKnown RBP15.5■□□□□ 0.07
HDDC3-201ENST00000330334 PPP2R2BQ00005 443 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 KRTAP1-1Q07627 177 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 TBRG1Q3YBR2 411 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 GLIPR1L2Q4G1C9 344 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 HIKESHIQ53FT3 197 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 SWT1Q5T5J6 900 aaKnown RBP15.5■□□□□ 0.07
HDDC3-201ENST00000330334 NIPAL3Q6P499 406 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ANKRD16Q6P6B7 361 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ARMC8Q8IUR7 673 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 C11orf65Q8NCR3 313 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 SLC41A3Q96GZ6 507 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ANKRD27Q96NW4 1050 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 EPYCQ99645 322 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 CACNG6Q9BXT2 260 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ARGLU1Q9NWB6 273 aaPredicted RBP15.5■□□□□ 0.07
HDDC3-201ENST00000330334 SELENONQ9NZV5 590 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 CRNNQ9UBG3 495 aaPredicted RBP15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ANGPT4Q9Y264 503 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 CORINQ9Y5Q5 1042 aa15.5■□□□□ 0.07
HDDC3-201ENST00000330334 ALPK2Q86TB3 2170 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 A0A0B4J2E0 115 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 A0A1B0GX12 115 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 FMO6PO60774 539 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 UPK3AO75631 287 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 LGI1O95970 557 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 C8BP07358 591 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 H2AFXP16104 143 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-201ENST00000330334 CDH2P19022 906 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-201ENST00000330334 CLDN17P56750 224 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 NCALDP61601 193 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 CHRNB3Q05901 458 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 RAB35Q15286 201 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 OR1Q1Q15612 314 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 HMBOX1Q6NT76 420 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 LINGO2Q7L985 606 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 KDM8Q8N371 416 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 SCAIQ8N9R8 606 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 OR10H5Q8NGA6 315 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 CGREF1Q99674 301 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 RHNO1Q9BSD3 238 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 KATNB1Q9BVA0 655 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 KLHL14Q9P2G3 628 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 SLC13A4Q9UKG4 626 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 ATP23Q9Y6H3 246 aa15.49■□□□□ 0.07
HDDC3-201ENST00000330334 INAFM1C9JVW0 142 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 M0R082 166 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 ANGPT2O15123 496 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 TPST2O60704 377 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 EDF1O60869 148 aaKnown RBP15.48■□□□□ 0.07
HDDC3-201ENST00000330334 SLC43A1O75387 559 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 PTNP21246 168 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 PCSK6P29122 969 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 GRPRP30550 384 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 RGS8P57771 180 aaPredicted RBP15.48■□□□□ 0.07
HDDC3-201ENST00000330334 UBE2NP61088 152 aaKnown RBP15.48■□□□□ 0.07
HDDC3-201ENST00000330334 LGALS3BPQ08380 585 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 DMTNQ08495 405 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 C1DQ13901 141 aaKnown RBP15.48■□□□□ 0.07
HDDC3-201ENST00000330334 RANBP3LQ86VV4 465 aaPredicted RBP15.48■□□□□ 0.07
HDDC3-201ENST00000330334 PTOV1Q86YD1 416 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 SLC30A8Q8IWU4 369 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 CCDC36Q8IYA8 594 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 ZNF417Q8TAU3 575 aa15.48■□□□□ 0.07
HDDC3-201ENST00000330334 ALKBH3Q96Q83 286 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms