RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 GPR39O43194 453 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 PTHP01270 115 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 GDF1P27539 372 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 HOXC5Q00444 222 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 HABP2Q14520 560 aaPredicted RBP9.27□□□□□ -0.92
COL4A6-208ENST00000538570 FCRLAQ7L513 359 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 OR52E1Q8NGJ3 308 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 MCOLN1Q9GZU1 580 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 C1orf123Q9NWV4 160 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 MYH10P35580 1976 aa9.27□□□□□ -0.92
COL4A6-208ENST00000538570 CSF2RAP15509 400 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 NME1P15531 152 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 ITGB7P26010 798 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 IL20RBQ6UXL0 311 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF765Q7L2R6 523 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 MDGA1Q8NFP4 955 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 RAB3CQ96E17 227 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 ANKRD19PQ9H560 264 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 BCO1Q9HAY6 547 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 OBP2BQ9NPH6 170 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 FAM212BQ9NTI7 297 aaPredicted RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 LRP5LA4QPB2 252 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 MGST1P10620 155 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF25P17030 456 aaPredicted RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 GABRB3P28472 473 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 RPS19P39019 145 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 CGB2Q6NT52 195 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 AMIGO3Q86WK7 504 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 OR4F15Q8NGB8 312 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 OR8J2Q8NGG1 315 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 LINC01599Q8WXQ3 324 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 PKMYT1Q99640 499 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 IER2Q9BTL4 223 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 GPR160Q9UJ42 338 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 TMEM82A0PJX8 343 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 FAM183AA6NL82 134 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 KDM4EB2RXH2 506 aaPredicted RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 HBE1P02100 147 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 CALCRP30988 508 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 EEF1A2Q05639 463 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 MBTPS1Q14703 1052 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 EXOSC7Q15024 291 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 NR0B2Q15466 257 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 C3orf38Q5JPI3 329 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 VIRMAQ69YN4 1812 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 RBMS3Q6XE24 437 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 BAGE3Q86Y29 109 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 BAGE2Q86Y30 109 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 SLC35B4Q969S0 331 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 EMC7Q9NPA0 242 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 RPH3ALQ9UNE2 315 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 OR52A4PA6NMU1 304 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 PRAMEF26H0Y7S4 382 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 PHOX2AO14813 284 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF207O43670 478 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 LALBAP00709 142 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 GABRA5P31644 462 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 PTGER4P35408 488 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 GABRA2P47869 451 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 HSF1Q00613 529 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 TLE4Q04727 773 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 FRMPD2BQ6IN97 320 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 Q6ZSR6 202 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 FAM57BQ71RH2 274 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 CLRN3Q8NCR9 226 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 SLC30A7Q8NEW0 376 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 POM121Q96HA1 1249 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 TOLLIPQ9H0E2 274 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 C1GALT1Q9NS00 363 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 NDRG3Q9UGV2 375 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 PURGQ9UJV8 347 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 SRPK3Q9UPE1 567 aa9.27□□□□□ -0.93
COL4A6-208ENST00000538570 PTRH2Q9Y3E5 179 aaKnown RBP9.27□□□□□ -0.93
COL4A6-208ENST00000538570 A0A0B4J2A0 478 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 PAX6P26367 422 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 HNRNPA3P51991 378 aaKnown RBP9.26□□□□□ -0.93
COL4A6-208ENST00000538570 F2RL1P55085 397 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 CATR1Q13166 79 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 SLC10A1Q14973 349 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 ZNF74Q16587 644 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 LYSMD2Q8IV50 215 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 MCATQ8IVS2 390 aaKnown RBP9.26□□□□□ -0.93
COL4A6-208ENST00000538570 GPR26Q8NDV2 337 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 OR2D3Q8NGH3 330 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 OR4D10Q8NGI6 311 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 ANKRD9Q96BM1 317 aaPredicted RBP9.26□□□□□ -0.93
COL4A6-208ENST00000538570 FOXN4Q96NZ1 517 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 NKX3-1Q99801 234 aaPredicted RBP9.26□□□□□ -0.93
COL4A6-208ENST00000538570 SHPKQ9UHJ6 478 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 MYH8P13535 1937 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 TRBV11-1A0A0K0K1C0 115 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 AQP7O14520 342 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 PRDX3P30048 256 aaKnown RBP9.26□□□□□ -0.93
COL4A6-208ENST00000538570 MRPS34P82930 218 aaKnown RBP9.26□□□□□ -0.93
COL4A6-208ENST00000538570 RAB35Q15286 201 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 FCN2Q15485 313 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 AADACL3Q5VUY0 350 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 OR7E24Q6IFN5 339 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 LIPIQ6XZB0 460 aa9.26□□□□□ -0.93
COL4A6-208ENST00000538570 HIST2H3AQ71DI3 136 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms