RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 HTR1AP08908 422 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 CD46P15529 392 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 EEF1B2P24534 225 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 GDF1P27539 372 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 IDUAP35475 653 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 RPL4P36578 427 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 EIF2S3P41091 472 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 TNFSF10P50591 281 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 GABARAPL2P60520 117 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 SLC35A2P78381 396 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 PIGFQ07326 219 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 OR7A5Q15622 319 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 SGCBQ16585 318 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 OCLNQ16625 522 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 GLYR1Q49A26 553 aaPredicted RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 DPY19L2P2Q6ZN68 376 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 CCDC81Q6ZN84 652 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 HIST3H2AQ7L7L0 130 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 OR5J2Q8NH18 312 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 ZNF417Q8TAU3 575 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 SLC25A43Q8WUT9 341 aaPredicted RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 HIST1H2ACQ93077 130 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 C5orf34Q96MH7 638 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 ZNF587Q96SQ5 575 aaPredicted RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 PIGQQ9BRB3 760 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 MRPS26Q9BYN8 205 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 CCDC86Q9H6F5 360 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 PLCXD1Q9NUJ7 323 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 SCN3BQ9NY72 215 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 TAS2R5Q9NYW4 299 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 SH3D21A4FU49 640 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 LIPT2A6NK58 231 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 URB1O60287 2271 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 FZD7O75084 574 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 SFTPDP35247 375 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 ZNF540Q8NDQ6 660 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 OR14L1PQ8NHC6 308 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 PLEKHA8Q96JA3 519 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 ERMAPQ96PL5 475 aaPredicted RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 KATNB1Q9BVA0 655 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 TTTY12Q9BZ98 90 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 OR2B2Q9GZK3 357 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 DUSP21Q9H596 190 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 PSORS1C1Q9UIG5 152 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 TPRKBQ9Y3C4 175 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 MRPS18CQ9Y3D5 142 aaKnown RBP16.75■□□□□ 0.27
CLN3-206ENST00000360019 IER3IP1Q9Y5U9 82 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 A0A1W2PNR3 127 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 TRIM64CA6NLI5 447 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 TRAPPC6AO75865 159 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 F13BP05160 661 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 ID4P47928 161 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 MEOX1P50221 254 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 ERVK-25P63136 954 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 CSNK2BP67870 215 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 TMEM176BQ3YBM2 270 aaPredicted RBP16.74■□□□□ 0.27
CLN3-206ENST00000360019 ZNF766Q5HY98 468 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 ARHGAP11AQ6P4F7 1023 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 Q96MT0 163 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 ZNF582Q96NG8 517 aaPredicted RBP16.74■□□□□ 0.27
CLN3-206ENST00000360019 OR5B2Q96R09 309 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 HINT3Q9NQE9 182 aaKnown RBP16.74■□□□□ 0.27
CLN3-206ENST00000360019 MRPL39Q9NYK5 338 aaKnown RBP16.74■□□□□ 0.27
CLN3-206ENST00000360019 ATMQ13315 3056 aa16.74■□□□□ 0.27
CLN3-206ENST00000360019 A0A087WXM4 84 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 PLPP3O14495 311 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 GLSO94925 669 aaPredicted RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 CD14P08571 375 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 FKBP2P26885 142 aaKnown RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 NOS3P29474 1203 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 CLK1P49759 484 aaKnown RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 CTXN1P60606 82 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 WIPI1Q5MNZ9 446 aaPredicted RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 AADACL4Q5VUY2 407 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 MEDAGQ5VYS4 303 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ZNF773Q6PK81 442 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 FAM122BQ7Z309 247 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 GGHQ92820 318 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 SMAD5Q99717 465 aaKnown RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 TAPBPLQ9BX59 468 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ASPNQ9BXN1 380 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 FKBP14Q9NWM8 211 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ALKBH4Q9NXW9 302 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 CORINQ9Y5Q5 1042 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 FAM183AA6NL82 134 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 CLCA1A8K7I4 914 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 KDM4EB2RXH2 506 aaPredicted RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 KLRC4-KLRK1H3BQV0 150 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ARPC3O15145 178 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 CLPTM1O96005 669 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 TFAP2AP05549 437 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ADRB1P08588 477 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ADORA3P0DMS8 318 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 HIST1H1CP16403 213 aaKnown RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 CD97P48960 835 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 PMS2P3Q13401 168 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 MFSD13AQ14CX5 517 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 AHSA2Q719I0 299 aa16.73■□□□□ 0.27
CLN3-206ENST00000360019 ZFP62Q8NB50 900 aaPredicted RBP16.73■□□□□ 0.27
CLN3-206ENST00000360019 ANKK1Q8NFD2 765 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms