RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SELENOPP49908 381 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 NR0B1P51843 470 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MYBPHQ13203 477 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 FGFBP1Q14512 234 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ADNP2Q6IQ32 1131 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 NHLRC1Q6VVB1 395 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF547Q8IVP9 402 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 NXPE3Q969Y0 559 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM8Q96KF7 97 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 C1QTNF2Q9BXJ5 285 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SLC17A9Q9BYT1 436 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 DUSP15Q9H1R2 295 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 C12orf4Q9NQ89 552 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 HRH3Q9Y5N1 445 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 EIF1AYO14602 144 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 OR2F2O95006 317 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ALPIP09923 528 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CSF2RAP15509 400 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 GJA1P17302 382 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 TRIM23P36406 574 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 POU4F2Q12837 409 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 OR2F1Q13607 317 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ULK3Q6PHR2 472 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ATRAIDQ6UW56 229 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 BIVMQ86UB2 503 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 BRD7Q9NPI1 651 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 PRDM7Q9NQW5 492 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 DUSP22Q9NRW4 184 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CALML5Q9NZT1 146 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 COPS3Q9UNS2 423 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MED31Q9Y3C7 131 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CLDN16Q9Y5I7 305 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 NUP205Q92621 2012 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SMIM30A4D0T7 59 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 D6RAR5 112 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 E7EQ34 232 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ATG12O94817 140 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 WNT1P04628 370 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 AZGP1P25311 298 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 GNALP38405 381 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CTSOP43234 321 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CSNK1EP49674 416 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 DIO1P49895 249 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 TDGQ13569 410 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SERTAD2Q14140 314 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 IQCHQ86VS3 1027 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SIAH3Q8IW03 269 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 WFDC5Q8TCV5 224 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 AUTS2Q8WXX7 1259 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 NTNG2Q96CW9 530 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CNRIP1Q96F85 164 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CDC6Q99741 560 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SLC35A5Q9BS91 424 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF576Q9H609 170 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ADGRL4Q9HBW9 690 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MRPS30Q9NP92 439 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF224Q9NZL3 707 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CXXC1Q9P0U4 656 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 EXTL2Q9UBQ6 330 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 IKZF2Q9UKS7 526 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 XKRYO14609 159 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CDC42EP2O14613 210 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MID1O15344 667 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 AGFG2O95081 481 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 GBAP04062 536 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CSF2P04141 144 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 EIF4EP06730 217 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 FCGR3AP08637 254 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 WNT2P09544 360 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 LINC00271P0C7V0 271 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ACP5P13686 325 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SUCLG1P53597 346 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ODF4Q2M2E3 257 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CLEC12AQ5QGZ9 265 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MED27Q6P2C8 311 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 FBXO42Q6P3S6 717 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CNKSR3Q6P9H4 555 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM220Q6QAJ8 160 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF615Q8N8J6 731 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 C17orf47Q8NEP4 570 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 OR10H4Q8NGA5 316 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 NEIL2Q969S2 332 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 OTUB2Q96DC9 234 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 AMDHD1Q96NU7 426 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 HRASLSQ9HDD0 168 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MBD2Q9UBB5 411 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SLC22A14Q9Y267 594 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 PCDHGA5Q9Y5G8 931 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MUC22E2RYF6 1773 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 A0A0G2JN53 185 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF860A6NHJ4 632 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 GLSO94925 669 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 PPP3CBP16298 524 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 S100GP29377 79 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CMPK1P30085 196 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SSR2P43308 183 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 EIF1AXP47813 144 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SLC25A1P53007 311 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CDH11P55287 796 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CD81P60033 236 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 179.2 ms