RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 C16orf89Q6UX73 402 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 TFAP2EQ6VUC0 442 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 GALNT5Q7Z7M9 940 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 ADPRHL1Q8NDY3 354 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 OR6T1Q8NGN1 323 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 MFSD8Q8NHS3 518 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 FAM222BQ8WU58 562 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 MCHR1Q99705 422 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 KCTD14Q9BQ13 255 aaPredicted RBP10.56□□□□□ -0.72
VPS52-213ENST00000461743 TMEM43Q9BTV4 400 aa10.56□□□□□ -0.72
VPS52-213ENST00000461743 SF3B5Q9BWJ5 86 aaKnown RBP10.56□□□□□ -0.72
VPS52-213ENST00000461743 ING1Q9UK53 422 aaPredicted RBP10.56□□□□□ -0.72
VPS52-213ENST00000461743 TRAV36DV7A0A075B6V5 113 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 IGHV3-15A0A0B4J1V0 119 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 TRAPPC13A5PLN9 417 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 AQP7P3A6NL99 342 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 ZNF716A6NP11 495 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 CXCR6O00574 342 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 GSTA4O15217 222 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 POU2F1P14859 743 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 PPP3CBP16298 524 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 CCNA2P20248 432 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 GTF2E2P29084 291 aaKnown RBP10.55□□□□□ -0.72
VPS52-213ENST00000461743 KIR2DL3P43628 341 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 OR3A2P47893 321 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 HOXC5Q00444 222 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 EGR4Q05215 589 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 POU4F3Q15319 338 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 NPTX1Q15818 432 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 FXNQ16595 210 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 CYBRD1Q53TN4 286 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 SAMD4BQ5PRF9 694 aaKnown RBP10.55□□□□□ -0.72
VPS52-213ENST00000461743 TUSC5Q8IXB3 177 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 MPP4Q96JB8 637 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 DACH2Q96NX9 599 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 SLC19A3Q9BZV2 496 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 OPN3Q9H1Y3 402 aaPredicted RBP10.55□□□□□ -0.72
VPS52-213ENST00000461743 ADPRHL2Q9NX46 363 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 CLEC4AQ9UMR7 237 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 CORINQ9Y5Q5 1042 aa10.55□□□□□ -0.72
VPS52-213ENST00000461743 TUBAL3A6NHL2 446 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 FTCDNL1E5RQL4 147 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 TPST2O60704 377 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 OR5F1O95221 314 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 ATP6V1G2O95670 118 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 IGF2P01344 180 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 THRBP10828 461 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 HSD17B1P14061 328 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 GGT1P19440 569 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 FPR1P21462 350 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 CALB2P22676 271 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 UGT2B10P36537 528 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 SELENOWP63302 87 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 BNIP2Q12982 314 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 CEACAM7Q14002 265 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 OR7A5Q15622 319 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 ENTPD8Q5MY95 495 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 OTUD3Q5T2D3 398 aaPredicted RBP10.54□□□□□ -0.72
VPS52-213ENST00000461743 ZNF474Q6S9Z5 364 aaPredicted RBP10.54□□□□□ -0.72
VPS52-213ENST00000461743 SSX8Q7RTT4 187 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 CARM1Q86X55 608 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 ARHGAP24Q8N264 748 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 FITM2Q8N6M3 262 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 SCAIQ8N9R8 606 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 VANGL1Q8TAA9 524 aaPredicted RBP10.54□□□□□ -0.72
VPS52-213ENST00000461743 ADAMTS16Q8TE57 1224 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 GEMIN6Q8WXD5 167 aaKnown RBP10.54□□□□□ -0.72
VPS52-213ENST00000461743 TMEM45BQ96B21 275 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 USB1Q9BQ65 265 aaKnown RBP10.54□□□□□ -0.72
VPS52-213ENST00000461743 ZNF426Q9BUY5 554 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 PTDSS2Q9BVG9 487 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 ARL8BQ9NVJ2 186 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 NDRG3Q9UGV2 375 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 RPS6KA6Q9UK32 745 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 USP22Q9UPT9 525 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 RASD1Q9Y272 281 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 TESMINQ9Y4I5 508 aa10.54□□□□□ -0.72
VPS52-213ENST00000461743 IGKV1D-42A0A075B6H8 117 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 CPSF4LA6NMK7 179 aaKnown RBP10.53□□□□□ -0.72
VPS52-213ENST00000461743 C16orf97H3BN30 126 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 GMNNO75496 209 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 MT-ATP6P00846 226 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 EPXP11678 715 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 PSMB1P20618 241 aaKnown RBP10.53□□□□□ -0.72
VPS52-213ENST00000461743 CCKARP32238 428 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 IFNA8P32881 189 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 RBM34P42696 430 aaKnown RBP10.53□□□□□ -0.72
VPS52-213ENST00000461743 P2RY4P51582 365 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 CDH12P55289 794 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 ELF3P78545 371 aaPredicted RBP10.53□□□□□ -0.72
VPS52-213ENST00000461743 SLC17A1Q14916 467 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 P2RY6Q15077 328 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 LINC00114Q6XXX2 140 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 Q6ZT83 130 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 CBLL1Q75N03 491 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 ZNF295-AS1Q8N0V1 137 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 GABRG1Q8N1C3 465 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 ZNF610Q8N9Z0 462 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 OR4D11Q8NGI4 311 aa10.53□□□□□ -0.72
VPS52-213ENST00000461743 PRRC1Q96M27 445 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms