RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RHNO1Q9BSD3 238 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 TMEM185BQ9H7F4 350 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 SERINC1Q9NRX5 453 aa16.79■□□□□ 0.28
CLN3-206ENST00000360019 PAK1IP1Q9NWT1 392 aaPredicted RBP16.79■□□□□ 0.28
CLN3-206ENST00000360019 TLX2O43763 284 aaPredicted RBP16.78■□□□□ 0.28
CLN3-206ENST00000360019 NME2P1O60361 137 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 CEACAM4O75871 244 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC2A10O95528 541 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 PPP1R3DO95685 299 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SP1P08047 785 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 NME2P22392 152 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC6A6P31641 620 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 UQCRC1P31930 480 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 AQP2P41181 271 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 ARG2P78540 354 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SELENBP1Q13228 472 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 TOP3AQ13472 1001 aaPredicted RBP16.78■□□□□ 0.28
CLN3-206ENST00000360019 APOFQ13790 326 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 RAET1LQ5VY80 246 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC6A19Q695T7 634 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC25A25Q6KCM7 469 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 IGFL2Q6UWQ7 119 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 BCDIN3DQ7Z5W3 292 aaKnown RBP16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC43A2Q8N370 569 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 TSPAN14Q8NG11 270 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC25A36Q96CQ1 311 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 SLC38A2Q96QD8 506 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 BOKQ9UMX3 212 aaPredicted RBP16.78■□□□□ 0.28
CLN3-206ENST00000360019 GPR52Q9Y2T5 361 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 BOD1L1Q8NFC6 3051 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 NCKAP5O14513 1909 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 BSNQ9UPA5 3926 aa16.78■□□□□ 0.28
CLN3-206ENST00000360019 ANKRD11Q6UB99 2663 aaPredicted RBP16.78■□□□□ 0.28
CLN3-206ENST00000360019 OR2M5A3KFT3 312 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 BLOC1S5-TXNDC5H3BN57 136 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 GRK5P34947 590 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 NUDT6P53370 316 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 PRPS1P60891 318 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 C19orf57Q0VDD7 668 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 TMEM201Q5SNT2 666 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 GALNTL5Q7Z4T8 443 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 NANOGNBQ7Z5D8 188 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 OR6S1Q8NH40 331 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 TMEM163Q8TC26 289 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 PRRG3Q9BZD7 231 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 CSAG2Q9Y5P2 127 aa16.77■□□□□ 0.28
CLN3-206ENST00000360019 OR2T1O43869 369 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 ENTPD6O75354 484 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 OPN1LWP04000 364 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 IMPDH2P12268 514 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 ZNF17P17021 662 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 SHC1P29353 583 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 GRPRP30550 384 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 FOXK2Q01167 660 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 RPL18Q07020 188 aaKnown RBP16.77■□□□□ 0.27
CLN3-206ENST00000360019 TOMM20Q15388 145 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 SLC35F1Q5T1Q4 408 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 MAMDC2Q7Z304 686 aaPredicted RBP16.77■□□□□ 0.27
CLN3-206ENST00000360019 SPACA3Q8IXA5 215 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 FAM26EQ8N5C1 309 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 LRRC75AQ8NAA5 344 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 MFSD8Q8NHS3 518 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 GPX7Q96SL4 187 aaPredicted RBP16.77■□□□□ 0.27
CLN3-206ENST00000360019 TEX12Q9BXU0 123 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 POTEKPQ9BYX7 375 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.77■□□□□ 0.27
CLN3-206ENST00000360019 AMBNQ9NP70 447 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 DNAJC27Q9NZQ0 273 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 DKK4Q9UBT3 224 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 BLOC1S6Q9UL45 172 aa16.77■□□□□ 0.27
CLN3-206ENST00000360019 SPIN1Q9Y657 262 aaPredicted RBP16.77■□□□□ 0.27
CLN3-206ENST00000360019 IGF2RP11717 2491 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 HMGN1P05114 100 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 TFPIP10646 304 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 ATP6V1B1P15313 513 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 RFC3P40938 356 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 B3GALT5-AS1P59052 145 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 MYBPHQ13203 477 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.76■□□□□ 0.27
CLN3-206ENST00000360019 ANKDD1AQ495B1 522 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 ALG10Q5BKT4 473 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 SLC25A30Q5SVS4 291 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 ZNF362Q5T0B9 420 aaPredicted RBP16.76■□□□□ 0.27
CLN3-206ENST00000360019 YRDCQ86U90 279 aaKnown RBP16.76■□□□□ 0.27
CLN3-206ENST00000360019 FAM83FQ8NEG4 500 aaPredicted RBP16.76■□□□□ 0.27
CLN3-206ENST00000360019 SCMH1Q96GD3 660 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 LRR1Q96L50 414 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 ZNF703Q9H7S9 590 aaPredicted RBP16.76■□□□□ 0.27
CLN3-206ENST00000360019 NRIP3Q9NQ35 241 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 CMC2Q9NRP2 79 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 CLN6Q9NWW5 311 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 BAIAP2Q9UQB8 552 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 KLF13Q9Y2Y9 288 aaPredicted RBP16.76■□□□□ 0.27
CLN3-206ENST00000360019 ADAM18Q9Y3Q7 739 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 FREM3P0C091 2139 aa16.76■□□□□ 0.27
CLN3-206ENST00000360019 NCOR2Q9Y618 2525 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 PTGES3LE9PB15 166 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 M0R082 166 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 FAM20BO75063 409 aa16.75■□□□□ 0.27
CLN3-206ENST00000360019 HIST1H2ABP04908 130 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms