RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 SMC1BQ8NDV3 1235 aa22.8■■□□□ 1.24
PNKP-230ENST00000638016 DDX58O95786 925 aaKnown RBP22.79■■□□□ 1.24
PNKP-230ENST00000638016 IGKV5-2P06315 115 aa22.79■■□□□ 1.24
PNKP-230ENST00000638016 SF3B3Q15393 1217 aaKnown RBP22.79■■□□□ 1.24
PNKP-230ENST00000638016 KSR2Q6VAB6 950 aa22.79■■□□□ 1.24
PNKP-230ENST00000638016 PPIP5K2O43314 1243 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 VAMP4O75379 141 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 BBOX1O75936 387 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 APLP1P51693 650 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 SP8Q8IXZ3 490 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 CCDC191Q8NCU4 936 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 L3MBTL3Q96JM7 780 aaPredicted RBP22.78■■□□□ 1.24
PNKP-230ENST00000638016 CCDC85AQ96PX6 553 aaPredicted RBP22.78■■□□□ 1.24
PNKP-230ENST00000638016 CWC25Q9NXE8 425 aaPredicted RBP22.78■■□□□ 1.24
PNKP-230ENST00000638016 SCN4AP35499 1836 aa22.78■■□□□ 1.24
PNKP-230ENST00000638016 LTBP1Q14766 1721 aa22.77■■□□□ 1.24
PNKP-230ENST00000638016 CWF19L2Q2TBE0 894 aaKnown RBP22.77■■□□□ 1.24
PNKP-230ENST00000638016 JDP2Q8WYK2 163 aa22.77■■□□□ 1.24
PNKP-230ENST00000638016 SEC31BQ9NQW1 1179 aa22.77■■□□□ 1.24
PNKP-230ENST00000638016 PCCAP05165 728 aaPredicted RBP22.76■■□□□ 1.23
PNKP-230ENST00000638016 DPP8Q6V1X1 898 aaPredicted RBP22.76■■□□□ 1.23
PNKP-230ENST00000638016 GJA3Q9Y6H8 435 aa22.76■■□□□ 1.23
PNKP-230ENST00000638016 FLIIQ13045 1269 aa22.75■■□□□ 1.23
PNKP-230ENST00000638016 MPNDQ8N594 471 aa22.75■■□□□ 1.23
PNKP-230ENST00000638016 RTFDC1Q9BY42 306 aaPredicted RBP22.75■■□□□ 1.23
PNKP-230ENST00000638016 TAF1DQ9H5J8 278 aaPredicted RBP22.75■■□□□ 1.23
PNKP-230ENST00000638016 ZNF521Q96K83 1311 aa22.75■■□□□ 1.23
PNKP-230ENST00000638016 GRIPAP1Q4V328 841 aa22.74■■□□□ 1.23
PNKP-230ENST00000638016 CHMP4AQ9BY43 222 aa22.74■■□□□ 1.23
PNKP-230ENST00000638016 TMX4Q9H1E5 349 aaPredicted RBP22.74■■□□□ 1.23
PNKP-230ENST00000638016 CACNA1FO60840 1977 aa22.73■■□□□ 1.23
PNKP-230ENST00000638016 NIM1KQ8IY84 436 aa22.73■■□□□ 1.23
PNKP-230ENST00000638016 GPR101Q96P66 508 aaPredicted RBP22.73■■□□□ 1.23
PNKP-230ENST00000638016 NEURL1BA8MQ27 555 aa22.72■■□□□ 1.23
PNKP-230ENST00000638016 EIF6P56537 245 aaKnown RBP22.72■■□□□ 1.23
PNKP-230ENST00000638016 FKBP5Q13451 457 aaPredicted RBP22.72■■□□□ 1.23
PNKP-230ENST00000638016 GPC2Q8N158 579 aa22.72■■□□□ 1.23
PNKP-230ENST00000638016 DNAJC5GQ8N7S2 189 aa22.72■■□□□ 1.23
PNKP-230ENST00000638016 ADAMTSL1Q8N6G6 1762 aa22.71■■□□□ 1.23
PNKP-230ENST00000638016 IQCA1LA6NCM1 817 aa22.71■■□□□ 1.23
PNKP-230ENST00000638016 PDE8AO60658 829 aa22.71■■□□□ 1.23
PNKP-230ENST00000638016 GPSM2P81274 684 aa22.71■■□□□ 1.23
PNKP-230ENST00000638016 EAPPQ56P03 285 aaPredicted RBP22.71■■□□□ 1.23
PNKP-230ENST00000638016 HACL1Q9UJ83 578 aa22.71■■□□□ 1.23
PNKP-230ENST00000638016 MYH3P11055 1940 aa22.7■■□□□ 1.23
PNKP-230ENST00000638016 EPHX2P34913 555 aa22.7■■□□□ 1.22
PNKP-230ENST00000638016 SCNN1DP51172 638 aa22.7■■□□□ 1.22
PNKP-230ENST00000638016 KIAA2012Q0VF49 1180 aa22.7■■□□□ 1.22
PNKP-230ENST00000638016 CHADLQ6NUI6 762 aa22.7■■□□□ 1.22
PNKP-230ENST00000638016 MYH16Q9H6N6 1097 aa22.7■■□□□ 1.22
PNKP-230ENST00000638016 NSFL1CQ9UNZ2 370 aaKnown RBP22.7■■□□□ 1.22
PNKP-230ENST00000638016 SPEF2Q9C093 1822 aa22.7■■□□□ 1.22
PNKP-230ENST00000638016 CDHR2Q9BYE9 1310 aa22.69■■□□□ 1.22
PNKP-230ENST00000638016 F6X3S4 739 aa22.69■■□□□ 1.22
PNKP-230ENST00000638016 RPS8P62241 208 aaKnown RBP22.69■■□□□ 1.22
PNKP-230ENST00000638016 NEXNQ0ZGT2 675 aa22.69■■□□□ 1.22
PNKP-230ENST00000638016 SUPT20HQ8NEM7 779 aa22.69■■□□□ 1.22
PNKP-230ENST00000638016 DNAAF4Q8WXU2 420 aa22.69■■□□□ 1.22
PNKP-230ENST00000638016 POLLQ9UGP5 575 aa22.69■■□□□ 1.22
PNKP-230ENST00000638016 YDJCA8MPS7 323 aa22.68■■□□□ 1.22
PNKP-230ENST00000638016 EPS15P42566 896 aa22.68■■□□□ 1.22
PNKP-230ENST00000638016 CXCL9Q07325 125 aa22.68■■□□□ 1.22
PNKP-230ENST00000638016 UBE3BQ7Z3V4 1068 aa22.68■■□□□ 1.22
PNKP-230ENST00000638016 TMC4Q7Z404 712 aa22.68■■□□□ 1.22
PNKP-230ENST00000638016 RIMBP2O15034 1052 aa22.67■■□□□ 1.22
PNKP-230ENST00000638016 CTSWP56202 376 aa22.67■■□□□ 1.22
PNKP-230ENST00000638016 CCDC152Q4G0S7 254 aa22.67■■□□□ 1.22
PNKP-230ENST00000638016 LDHDQ86WU2 507 aa22.67■■□□□ 1.22
PNKP-230ENST00000638016 ZNRF3Q9ULT6 936 aa22.67■■□□□ 1.22
PNKP-230ENST00000638016 RAD17O75943 681 aa22.66■■□□□ 1.22
PNKP-230ENST00000638016 C6orf229H3BNL8 230 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 H7C1W4 665 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 GCKRQ14397 625 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 TTLL11Q8NHH1 800 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 VPS33BQ9H267 617 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 GREM2Q9H772 168 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 DBNDD1Q9H9R9 158 aa22.65■■□□□ 1.22
PNKP-230ENST00000638016 CASP7P55210 303 aa22.64■■□□□ 1.21
PNKP-230ENST00000638016 TBC1D16Q8TBP0 767 aa22.64■■□□□ 1.21
PNKP-230ENST00000638016 CLEC11AQ9Y240 323 aa22.64■■□□□ 1.21
PNKP-230ENST00000638016 SHTN1A0MZ66 631 aa22.63■■□□□ 1.21
PNKP-230ENST00000638016 WTIPA6NIX2 430 aaPredicted RBP22.63■■□□□ 1.21
PNKP-230ENST00000638016 HSP90B1P14625 803 aaKnown RBP22.63■■□□□ 1.21
PNKP-230ENST00000638016 WASHC4Q2M389 1173 aa22.63■■□□□ 1.21
PNKP-230ENST00000638016 MAP1SQ66K74 1059 aaPredicted RBP22.63■■□□□ 1.21
PNKP-230ENST00000638016 CDCA7LQ96GN5 454 aa22.63■■□□□ 1.21
PNKP-230ENST00000638016 SCN9AQ15858 1988 aa22.63■■□□□ 1.21
PNKP-230ENST00000638016 LMOD1P29536 600 aaPredicted RBP22.62■■□□□ 1.21
PNKP-230ENST00000638016 GMPSP49915 693 aaPredicted RBP22.62■■□□□ 1.21
PNKP-230ENST00000638016 DOK7Q18PE1 504 aa22.62■■□□□ 1.21
PNKP-230ENST00000638016 CIAPIN1Q6FI81 312 aa22.62■■□□□ 1.21
PNKP-230ENST00000638016 LINS1Q8NG48 757 aa22.62■■□□□ 1.21
PNKP-230ENST00000638016 KLRG1Q96E93 195 aa22.62■■□□□ 1.21
PNKP-230ENST00000638016 KCNQ5Q9NR82 932 aa22.62■■□□□ 1.21
PNKP-230ENST00000638016 PASKQ96RG2 1323 aa22.61■■□□□ 1.21
PNKP-230ENST00000638016 UFL1O94874 794 aa22.61■■□□□ 1.21
PNKP-230ENST00000638016 ANKRD18AQ8IVF6 992 aa22.61■■□□□ 1.21
PNKP-230ENST00000638016 ITGBL1O95965 494 aaPredicted RBP22.6■■□□□ 1.21
PNKP-230ENST00000638016 FMR1Q06787 632 aaKnown RBP eCLIP22.6■■□□□ 1.21
PNKP-230ENST00000638016 FAM161AQ3B820 660 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms