RNA–Protein interactions for RNA: ENST00000621708.4

PCDH15-233, Transcript of protocadherin related 15, human

APPRIS ALT2 TSL 5 BASIC

Gene PCDH15, Length 5,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-233	ENST00000621708	USP21	Q9UK80	565 aa		10.21	□□□□□ -0.77
PCDH15-233	ENST00000621708	CAMSAP1	Q5T5Y3	1602 aa		10.21	□□□□□ -0.77
PCDH15-233	ENST00000621708	SMTNL1	A8MU46	457 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	SDS	P20132	328 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	CARD10	Q9BWT7	1032 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	LUC7L	Q9NQ29	371 aa	Known RBP	10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	PDE8A	O60658	829 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	GNAQ	P50148	359 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	TBC1D32	Q96NH3	1257 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	ESYT1	Q9BSJ8	1104 aa		10.21	□□□□□ -0.78
PCDH15-233	ENST00000621708	PHKG2	P15735	406 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	MCM4	P33991	863 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	EIF4A1	P60842	406 aa	Known RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	CCDC173	Q0VFZ6	552 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	TMEM67	Q5HYA8	995 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	KAT14	Q9H8E8	782 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	PAG1	Q9NWQ8	432 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	RBM27	Q9P2N5	1060 aa	Known RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	CEBPZ	Q03701	1054 aa	Known RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	NAA16	Q6N069	864 aa	Predicted RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	ESR2	Q92731	530 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	UPF3B	Q9BZI7	483 aa	Known RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	IGSF1	Q8N6C5	1336 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	GNPAT	O15228	680 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	CTAGE5	O15320	804 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	CYP7A1	P22680	504 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	ARHGEF25	Q86VW2	580 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	FLAD1	Q8NFF5	587 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	DNAJC5	Q9H3Z4	198 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	ZBTB7B	O15156	539 aa	Predicted RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	CCDC96	Q2M329	555 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	DIP2C	Q9Y2E4	1556 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	TMEM132A	Q24JP5	1023 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	TMEM266	Q2M3C6	531 aa		10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	ZNHIT6	Q9NWK9	470 aa	Known RBP	10.2	□□□□□ -0.78
PCDH15-233	ENST00000621708	ALK	Q9UM73	1620 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	TSPY2	A6NKD2	308 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	RNF113A	O15541	343 aa	Known RBP	10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	DENND2A	Q9ULE3	1009 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	SNRK	Q9NRH2	765 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	EYA2	O00167	538 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	BMP15	O95972	392 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	IARS	P41252	1262 aa	Known RBP	10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	CWF19L2	Q2TBE0	894 aa	Known RBP	10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	CNBD1	Q8NA66	436 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	ADGRL3	Q9HAR2	1447 aa		10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	ZC3H12C	Q9C0D7	883 aa	Known RBP	10.19	□□□□□ -0.78
PCDH15-233	ENST00000621708	CALM1	P0DP23	149 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	CALM2	P0DP24	149 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	CALM3	P0DP25	149 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	CT47A1	Q5JQC4	288 aa	Predicted RBP	10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	DDX11	Q96FC9	970 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	BICC1	Q9H694	974 aa	Known RBP	10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	HELLS	Q9NRZ9	838 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	CCDC194	A0A1B0GVG4	234 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	KIF20A	O95235	890 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	OGFOD1	Q8N543	542 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	LGR6	Q9HBX8	967 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	METAP2	P50579	478 aa	Known RBP eCLIP	10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	MAP3K11	Q16584	847 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	USP16	Q9Y5T5	823 aa		10.18	□□□□□ -0.78
PCDH15-233	ENST00000621708	RTL9	Q8NET4	1388 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	MAGEB6P1	A0A0J9YX57	407 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	BAG4	O95429	457 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	WTAP	Q15007	396 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	SYCP1	Q15431	976 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	PDILT	Q8N807	584 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	SLC4A4	Q9Y6R1	1079 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	MAST3	O60307	1309 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	RDX	P35241	583 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	PUM3	Q15397	648 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	KRT24	Q2M2I5	525 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	MPHOSPH6	Q99547	160 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	CEP152	O94986	1710 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	PRIM1	P49642	420 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	NLRP5	P59047	1200 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	JARID2	Q92833	1246 aa	Predicted RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	KDR	P35968	1356 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	EPB41L2	O43491	1005 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	SERPINC1	P01008	464 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	SLC9C2	Q5TAH2	1124 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	CCDC148	Q8NFR7	591 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	RBM8A	Q9Y5S9	174 aa	Known RBP	10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	WDR17	Q8IZU2	1322 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	MADD	Q8WXG6	1647 aa		10.17	□□□□□ -0.78
PCDH15-233	ENST00000621708	TULP4	Q9NRJ4	1543 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	NCAPD2	Q15021	1401 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	USP19	O94966	1318 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	RLBP1	P12271	317 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	ODF2	Q5BJF6	829 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	PPFIBP1	Q86W92	1011 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	SNX21	Q969T3	373 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	TRPC5	Q9UL62	973 aa	Predicted RBP	10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	THRAP3	Q9Y2W1	955 aa	Known RBP	10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	ARHGEF40	Q8TER5	1519 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	FAM98C	Q17RN3	349 aa	Known RBP	10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708	SUPT20H	Q8NEM7	779 aa		10.16	□□□□□ -0.78
PCDH15-233	ENST00000621708		E9PCH4	1651 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms