RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 U2AF2P26368 475 aaKnown RBP eCLIP11.32□□□□□ -0.6
COL4A6-210ENST00000621266 KIAA0753Q2KHM9 967 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 WDR78Q5VTH9 848 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 SMC6Q96SB8 1091 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 RHOXF2BP0C7M4 288 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 ANO6Q4KMQ2 910 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 CCDC184Q52MB2 194 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 NME9Q86XW9 330 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 CAPZA3Q96KX2 299 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 RHOXF2Q9BQY4 288 aa11.32□□□□□ -0.6
COL4A6-210ENST00000621266 CWC25Q9NXE8 425 aaPredicted RBP11.32□□□□□ -0.6
COL4A6-210ENST00000621266 PSMC4P43686 418 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 SWAP70Q9UH65 585 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 CTNNA3Q9UI47 895 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 BUB1BO60566 1050 aaPredicted RBP11.31□□□□□ -0.6
COL4A6-210ENST00000621266 SETSIPP0DME0 302 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
COL4A6-210ENST00000621266 PCK1P35558 622 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 PPP1R12CQ9BZL4 782 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 TPD52P55327 224 aaPredicted RBP11.31□□□□□ -0.6
COL4A6-210ENST00000621266 UBASH3AP57075 661 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 SUDS3Q9H7L9 328 aaPredicted RBP11.31□□□□□ -0.6
COL4A6-210ENST00000621266 ADGRF5Q8IZF2 1346 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 PLEKHH1Q9ULM0 1364 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 FGFR1OPO95684 399 aaKnown RBP11.31□□□□□ -0.6
COL4A6-210ENST00000621266 GRIPAP1Q4V328 841 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 CCDC82Q8N4S0 544 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 EXOC6BQ9Y2D4 811 aa11.31□□□□□ -0.6
COL4A6-210ENST00000621266 GPTP24298 496 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 C20orf194Q5TEA3 1177 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 CADPS2Q86UW7 1296 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 ZSCAN25Q6NSZ9 544 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 FEZ1Q99689 392 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 CCT2P78371 535 aaKnown RBP11.3□□□□□ -0.6
COL4A6-210ENST00000621266 RABEP2Q9H5N1 569 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 FAM184BQ9ULE4 1060 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 UBE2HP62256 183 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 LACTBP83111 547 aaPredicted RBP11.3□□□□□ -0.6
COL4A6-210ENST00000621266 TSNARE1Q96NA8 513 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 TMOD2Q9NZR1 351 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 STX6O43752 255 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 EHBP1Q8NDI1 1231 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 FAM76AQ8TAV0 307 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 IQCGQ9H095 443 aaKnown RBP11.3□□□□□ -0.6
COL4A6-210ENST00000621266 ANAPC4Q9UJX5 808 aa11.3□□□□□ -0.6
COL4A6-210ENST00000621266 WASLO00401 505 aaPredicted RBP11.29□□□□□ -0.6
COL4A6-210ENST00000621266 NBPF14Q5TI25 921 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 SEPT14Q6ZU15 432 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 SH2B1Q9NRF2 756 aaPredicted RBP11.29□□□□□ -0.6
COL4A6-210ENST00000621266 DHX29Q7Z478 1369 aaKnown RBP11.29□□□□□ -0.6
COL4A6-210ENST00000621266 CTAGE9A4FU28 777 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 PTGS1P23219 599 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 MCM10Q7L590 875 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 BANK1Q8NDB2 785 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 STIM2Q9P246 746 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 PPFIA3O75145 1194 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 POLD1P28340 1107 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 ATP11AP98196 1134 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 SLFN5Q08AF3 891 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 SLC4A8Q2Y0W8 1093 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 CCDC40Q4G0X9 1142 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 SYT10Q6XYQ8 523 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 MYD88Q99836 296 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 LIMCH1Q9UPQ0 1083 aa11.29□□□□□ -0.6
COL4A6-210ENST00000621266 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
COL4A6-210ENST00000621266 SEC62Q99442 399 aaKnown RBP11.28□□□□□ -0.6
COL4A6-210ENST00000621266 BIVM-ERCC5R4GMW8 1640 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 RAB11FIP3O75154 756 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 ERCC3P19447 782 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 LMNTD2Q8IXW0 634 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 RPAP2Q8IXW5 612 aaPredicted RBP11.28□□□□□ -0.6
COL4A6-210ENST00000621266 PPFIBP2Q8ND30 876 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 SAMD15Q9P1V8 674 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 FLIIQ13045 1269 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 TCERG1LQ5VWI1 586 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 CCDC63Q8NA47 563 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 IFT81Q8WYA0 676 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 C6orf229H3BNL8 230 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 TFCP2L1Q9NZI6 479 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 ST5P78524 1137 aa11.28□□□□□ -0.6
COL4A6-210ENST00000621266 PRC1O43663 620 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 POLR3DP05423 398 aaPredicted RBP11.27□□□□□ -0.6
COL4A6-210ENST00000621266 MX1P20591 662 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 ATP6V1AP38606 617 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 KCNK9Q9NPC2 374 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 N4BP3O15049 544 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 KRT13P13646 458 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 SYT1P21579 422 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 GBP7Q8N8V2 638 aaPredicted RBP11.27□□□□□ -0.6
COL4A6-210ENST00000621266 STMN2Q93045 179 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 CNPY2Q9Y2B0 182 aa11.27□□□□□ -0.6
COL4A6-210ENST00000621266 HMGB2P26583 209 aaKnown RBP11.27□□□□□ -0.61
COL4A6-210ENST00000621266 AMOTQ4VCS5 1084 aa11.27□□□□□ -0.61
COL4A6-210ENST00000621266 ABCC11Q96J66 1382 aa11.27□□□□□ -0.61
COL4A6-210ENST00000621266 PRIM1P49642 420 aaKnown RBP11.27□□□□□ -0.61
COL4A6-210ENST00000621266 RAB3IL1Q8TBN0 382 aa11.27□□□□□ -0.61
COL4A6-210ENST00000621266 MMRN2Q9H8L6 949 aa11.27□□□□□ -0.61
COL4A6-210ENST00000621266 CEP126Q9P2H0 1117 aa11.27□□□□□ -0.61
COL4A6-210ENST00000621266 LRP2BPQ9P2M1 347 aa11.27□□□□□ -0.61
COL4A6-210ENST00000621266 ABCF2Q9UG63 623 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms